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10x Genomics Visium CytAssist User Manual

10x Genomics Visium CytAssist
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10xgenomics.com
User Guide | CG000542 | Rev F
Visium CytAssist
with Readiness Test
For use with:
Visium CytAssist & Accessory Kit, 12-Month Warranty, PN-1000441
Visium CytAssist Instrument Accessory Kit, PN-1000433
Visium CytAssist & Accessory Kit, 24-Month Warranty, PN-1000442
Visium CytAssist Instrument Accessory Kit, PN-1000433

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10x Genomics Visium CytAssist Specifications

General IconGeneral
CategoryLaboratory Equipment
TechnologySpatial transcriptomics
Slide formatStandard microscope slides
Power Requirements100-240 V AC, 50/60 Hz
Sample TypeTissue sections
Resolution55 μm
Data OutputSpatial Gene Expression Data
AutomationSemi-automated
Operating Humidity20-80% non-condensing

Summary

Notices

Legal Notices

All rights reserved, disclaimers, terms and conditions, and research use only statement.

Software Updates & Warranties

Policies for replacing or repairing instruments due to updates.

Customer Support Information

Contact information for customer support, including email and address.

Document Revision Summary

Specific Revisions

Details specific modifications from Rev E to Rev F in the document.

General Document Changes

Outlines broad document updates for consistency and clarity.

Visium CytAssist Introduction

Product Identification and Specifications

Details about identifying the instrument and its technical specifications.

Instrument Overview and Highlights

Explains the instrument's function, benefits, and workflow integration.

Safety and Compliance

Operational Safety Precautions

General safety precautions and hazard symbols for instrument operation.

Regulatory Certifications

Lists certifications and standards the instrument complies with.

System Components

Instrument Exterior and Interior

Overview of the instrument's exterior and interior parts.

Accessory Kit Contents

Lists the components included in the accessory kits.

Tips and Best Practices

Understanding Guide Icons

Explains the meaning of various symbols used throughout the guide.

Tissue Slide Placement Guidance

Guidance on correctly positioning tissue slides for optimal results.

Visium Slide Loading Instructions

Steps for correctly loading Visium slides onto the instrument's stage.

Cloud and Scanner Integration

Information on 10x Genomics Cloud and barcode scanner usage.

System Operation

Instrument Installation

Procedures for installing the Visium CytAssist instrument.

First-Time Setup and Configuration

Guide for initial setup, network connection, and leveling.

Readiness Test Procedure

Instructions for performing the instrument's calibration and readiness check.

Performing a Run

Overview of the instrument's primary functions and run procedures.

Menu Options and Data Management

Navigating Instrument Menus

Describes accessing main menu functions like Logs, Connectivity, System.

Exporting and Managing Run Data

How to export, upload, and delete instrument run data and support packages.

Firmware Update Procedure

Downloading and Installing Firmware

Detailed steps for downloading and installing instrument firmware updates.

Post-Update System Checks

Steps for cleaning and reinitializing the instrument after an update.

Network Shared Folder Setup

Configuring Windows Network Shares

Steps for setting up Windows 10/11 folders for data transfer.

Configuring macOS Network Shares

Steps for setting up macOS folders for data transfer.

Connecting to Network Shares

Instructions for connecting the instrument to a network shared folder.

Network Shared Folder Troubleshooting

Common NSF Error Codes

Lists common errors and their possible causes for Network Shared Folder setup.

Instrument Maintenance

Routine System Cleaning

Procedures for cleaning and maintaining the instrument's interior and exterior.

Safe Instrument Transport

Instructions for safely moving, shipping, or returning the instrument.

Troubleshooting Guide

Common Instrument Issues

Guidance on addressing common operational problems and slide loading issues.

Error Screen Interpretation

Information on interpreting and handling critical and recoverable error messages.

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