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illumina iSeq 100 User Manual

illumina iSeq 100
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iSeq 100
Sequencing System Guide
Document # 1000000036024 v05
March 2019
ILLUMINA PROPRIETARY
For Research Use Only. Not for use in diagnostic procedures.

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illumina iSeq 100 Specifications

General IconGeneral
Brandillumina
ModeliSeq 100
CategoryRecording Equipment
LanguageEnglish

Summary

Chapter 1 Overview

Introduction to iSeq 100 System

Overview of the Illumina iSeq 100 Sequencing System as a targeted NGS approach.

Additional Resources

Links to Illumina website for system support, software, and documentation.

Instrument Components

Identification and description of the iSeq 100 system's physical parts and ports.

iSeq 100 i1 Reagent

Details on the single-use reagent kit, its contents, and storage requirements.

Chapter 2 Getting Started

First Time Setup

Guided process for initial instrument setup, including system checks and settings.

Minimize the Control Software

Instructions on minimizing the control software to access other applications.

Run Settings

Configuration options for run setup, monitoring, and data analysis.

Instrument Customization

Settings for instrument naming, audio, thumbnail images, and software updates.

Network Setup

Configuring WiFi or Ethernet connections for system operation and data transfer.

User-Supplied Consumables and Equipment

List of consumables and equipment required from the user for operation.

Chapter 3 Sequencing

Introduction to Sequencing Process

Overview of the sequencing process stages: cluster generation, sequencing, and analysis.

Thaw the Bagged Cartridge

Step-by-step guide for safely thawing the reagent cartridge before use.

Prepare the Flow Cell and Libraries

Procedures for diluting libraries and preparing the flow cell for sequencing.

Load Consumables Into the Cartridge

Instructions on loading the flow cell and diluted library into the cartridge.

Set Up a Sequencing Run (Local Run Manager)

Guide for setting up a run using the Local Run Manager software.

Set Up a Sequencing Run (Manual Mode)

Guide for setting up a run using manual parameters in the control software.

Chapter 4 Maintenance

Clear Hard Drive Space

Steps to delete completed runs and free up disk space on the instrument.

Software Updates

Procedures for installing automatic or manual software updates.

Replace the Air Filter

Instructions for replacing the instrument's air filter for proper cooling.

Relocate the Instrument

Safe procedures for moving the instrument to a new location.

Software Restriction Policies

Information on managing Windows Software Restriction Policies for system security.

Appendix A Sequencing Output

Real-Time Analysis Overview

Explanation of the Real-Time Analysis software and its role in base calling.

Real-Time Analysis Workflow

Detailed breakdown of the RTA2 workflow stages: intensity extraction to quality scoring.

Appendix B Troubleshooting

Error Message Resolution

Workflow for troubleshooting common error messages during instrument operation.

Process Management Status

How to monitor run status and troubleshoot issues in Process Management.

Cancel a Started Run

Steps to safely cancel an ongoing sequencing run.

Power Cycle the Instrument

Procedures for safely shutting down and restarting the instrument.

Perform a System Check

Guide for performing a system check using reusable test components.

Leak Mitigation

Steps to assess and address fluid leaks detected during operation.

Restore to Factory Settings

Process for resetting the system to factory defaults for software or configuration issues.

Appendix C Advanced Exchange

Exchanging the iSeq 100 System

Overview of Illumina's advanced exchange program for system issues.

Receive a Replacement System

Procedure for receiving and installing a replacement instrument.

Prepare the Original System for Return

Instructions for shutting down, disconnecting, and packaging the original system.

Shut Down and Disconnect

Steps to safely shut down the system and disconnect cables before return.

Technical Assistance

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