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Thermo Scientific LTQ XL User Manual

Thermo Scientific LTQ XL
176 pages
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For Research Use Only
Not for use in Diagnostic Procedures
LTQ XL
®
Getting Started
97355-97042 Revision A June 2006

Table of Contents

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Thermo Scientific LTQ XL Specifications

General IconGeneral
BrandThermo Scientific
ModelLTQ XL
CategoryLaboratory Equipment
LanguageEnglish

Summary

Preface

About This Guide

Provides an overview of the LTQ XL system and manual contents.

Safety and Special Notices

Details important safety information and hazard warnings.

Contacting Thermo Electron

Information on how to get technical support and order products.

Chapter 1 Introduction

Why Use the LTQ XL MS Detector?

Explains the analytical advantages and specificity of the LTQ XL MS detector.

MS Detector Techniques: ESI vs. APCI

Compares Electrospray Ionization (ESI) and Atmospheric Pressure Chemical Ionization (APCI).

Sample Introduction Methods

Describes various ways to introduce samples into the MS detector.

Tuning and Calibration Overview

Explains the importance and basic steps of MS detector tuning and calibration.

Types of Experiments

Outlines different experiment types like MSn, Data-Dependent, Ion Mapping, and Ion Tree.

Chapter 2 Setting Up the Ion Source

Placing the LC/MS System in Standby

Procedure to put the LC/MS system into standby mode safely.

Removing and Installing Ion Source Components

Instructions for removing probes and components like the APCI probe and sweep cone.

Installing the ESI Probe

Detailed steps for installing the ESI probe into the ion source housing.

Chapter 3 Tuning and Calibrating in ESI/MS Mode

Syringe Pump Setup for Tuning

Connects the syringe pump for infusing calibration solution.

Xcalibur Setup for Tuning

Configures the Xcalibur system for MS detector tuning.

Testing MS Detector Operation

Verifies proper MS detector operation with calibration solution.

Automatic Tuning and Calibration

Optimizes MS detector parameters and calibrates voltages automatically.

Saving ESI/MS Tune Methods

Saves optimized tuning parameters for future use.

Chapter 4 Tuning with Analyte in LC/ESI/MS Mode

Sample Introduction for Analyte Tuning

Sets up sample introduction via syringe pump into LC flow.

Setting Up MS Detector for Analyte Tuning

Configures scan parameters for tuning with a specific analyte.

Automatic Tune Optimization for Analyte

Maximizes ion transmission for the analyte of interest.

Saving ESI/MS Tune Methods

Saves the optimized tune method for the analyte.

Chapter 5 Acquiring ESI Sample Data

MS/MS Data Acquisition (Full Scan)

Acquires MS/MS data in full scan mode, optimizing isolation width and collision energy.

Loop Injection Setup

Plumbing connections for introducing sample via loop injection.

SIM Scan Data Acquisition

Acquires data using Selected Ion Monitoring (SIM) scan mode.

Chapter 6 Setting Up Ion Source for APCI/MS/MS Mode

Removing the ESI Probe

Procedure to remove the ESI probe from the ion source housing.

Ion Source Housing and Sweep Cone Procedures

Steps for removing ion source housing and sweep cone.

Installing Corona Needle and APCI Probe

Instructions for installing corona needle and APCI probe.

Chapter 7 Optimizing MS Detector in APCI/MS Mode

Inlet Setup for High-Flow Infusion

Connects syringe pump for APCI/MS sample introduction.

MS Detector Setup for APCI/MS Operation

Configures scan parameters for APCI/MS tuning.

Automatic Tune Optimization (APCI/MS)

Optimizes MS detector tune automatically for APCI operation.

Saving APCI/MS Tune Method

Saves optimized APCI tune parameters.

Cleaning Detector after APCI Tuning

Cleans the MS detector after tuning in APCI mode.

Chapter 8 Acquiring APCI Sample Data

Loop Injection Setup for APCI/MS

Plumbing for sample introduction via loop injection from LC.

SIM Scan Data Acquisition (APCI)

Acquires APCI data in SIM scan mode.

Appendix A Sample Formulations

Stock Solutions: Caffeine, MRFA, Ultramark 1621

Preparation instructions for stock solutions of key analytes.

Calibration and Reserpine Solutions

Preparation of ESI calibration and reserpine stock/sample solutions.

Appendix B LTQ XL High Mass Range Calibration

High Mass Range Calibration Solution

Description of the polypropylene glycol solution for high mass calibration.

Normal Mass Range Calibration

Procedure for calibrating the normal mass range.

Enter Normal Mass Range Data

Inputting normal mass range calibration data into Tune Plus.

High Mass Range Calibration Procedure

Steps for performing high mass range calibration automatically.

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