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SCIEX 3200 Series User Manual

SCIEX 3200 Series
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SCIEX 3200 Systems
System User Guide
RUO-IDV-05-6475-C February 2022

Table of Contents

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SCIEX 3200 Series Specifications

General IconGeneral
TypeTriple Quadrupole Mass Spectrometer
Dynamic Range> 5 orders of magnitude
Mass AnalyzerTriple Quadrupole
PolarityPositive and Negative
Scan ModesMultiple Reaction Monitoring (MRM), Precursor Ion Scan, Product Ion Scan, Neutral Loss Scan
Ion SourceTurbo V Ion Source
Power Requirements200 – 240 VAC
ResolutionUnit resolution (0.7 Da FWHM)

Summary

Operational Precautions and Limitations

General Safety Information

Provides essential safety guidelines and warnings for operating the system.

Documentation Symbols and Conventions

Explains symbols and conventions used throughout the user guide.

Regulatory Compliance

Details compliance with various regional and international standards and regulations.

Electrical Precautions

Outlines critical safety measures related to electrical hazards and system power.

Chemical Precautions

Details safety measures for handling chemicals and hazardous materials.

System Safe Fluids

Lists fluids approved for use with the system and guidelines for their use.

Ventilation Precautions

Specifies requirements for proper ventilation and exhaust systems for safe operation.

Physical Precautions

Covers safety measures related to the physical handling and movement of the equipment.

Environmental Precautions

Addresses safe handling, disposal, and environmental conditions for the system.

Electromagnetic Environment

Discusses electromagnetic compatibility and interference considerations for system operation.

Decommissioning and Disposal

Provides instructions for safely retiring and disposing of the system components.

Qualified Personnel

Defines the qualifications required for personnel operating and maintaining the system.

Laboratory Conditions

Specifies the environmental conditions required for safe and optimal system operation.

Safe Environmental Conditions

Details the safe operating environmental conditions for the system.

Performance Specifications

Lists the performance parameters and conditions under which the system meets specifications.

Equipment Use and Modification

Outlines guidelines for proper equipment usage and restrictions on modifications.

Principles of Operation

System Overview

Provides a general overview of the components within the 3200 series instruments.

Hardware Overview

Details the front and back views of the instrument hardware with component identification.

Ion Source Overview

Explains the different types of ion sources and their ionization modes (ESI, APCI).

Ion Source Components

Identifies and describes the components of the ion source assembly.

Probes

Compares specifications and describes the TurboIonSpray and APCI probes.

Theory of Operation

Explains the fundamental principles of mass spectrometry and the 3200 system's ion optics.

Ion Source Installation

Prepare for Installation

Outlines preparatory steps and required materials for installing the ion source.

Install the Probe

Provides step-by-step instructions for installing the ion source probe.

Connect the Ion Source Tubing

Details the procedure for connecting the sample tubing to the ion source.

Install the Ion Source on the Mass Spectrometer

Guides the user through the process of mounting the ion source onto the mass spectrometer.

Inspect for Leaks

Describes how to check for leaks after installation to ensure system integrity.

Ion Source Optimization

Sample Introduction

Discusses methods and flow rates for introducing samples into the ion source.

Flow Rate

Specifies the flow rate ranges supported by the TurboIonSpray and APCI probes.

TurboIonSpray Probe Optimization

Provides detailed steps for optimizing the TurboIonSpray probe for best performance.

Flow Rate and Ion Source Temperature

Explains how flow rate and solvent composition affect optimal probe temperature.

Set Up the System

Steps to configure the LC pump and autosampler for system setup.

Prepare the System

Steps to prepare the system using control software for optimization.

Set the Starting Conditions

Defines initial parameter settings for ion source optimization.

Optimize the TurboIonSpray Probe Position

Guides on adjusting probe position for optimal signal-to-noise ratio.

Optimize Source and Gas Parameters and Voltage

Adjusting gas flows and voltages for optimal signal stability and sensitivity.

Optimize the Turbo Heater Temperature

Details how to adjust the turbo heater temperature for optimal performance.

APCI Probe Optimization

Steps to optimize the APCI probe for optimal signal and stability.

Optimization Tips

Offers general advice for optimizing ion source performance and minimizing maintenance.

Operating Instructions

Start Up the System

Outlines the prerequisites and steps for safely powering on and starting the system.

Syringe Pump

Explains how to adjust and use the integrated syringe pump for sample infusion.

Diverter Valve

Describes how to configure and use the integrated diverter valve.

Plumb the Diverter Valve in Injector Mode

Details the tubing connections for the diverter valve in injector mode.

Plumb the Diverter Valve in Diverter Mode

Details the tubing connections for the diverter valve in diverter mode.

Shut Down and Vent the System

Provides instructions for safely shutting down and venting the system.

Operating Instructions — User Workflows

Service and Maintenance Information — Mass Spectrometer

Recommended Maintenance Schedule

Provides a schedule and guidelines for routine cleaning and maintenance tasks.

Clean the Surfaces

Details methods for cleaning the external surfaces of the mass spectrometer.

Clean the Front-End

Explains how to perform routine cleaning of the mass spectrometer's front-end components.

Symptoms of Contamination

Lists signs indicating system contamination and the need for cleaning.

Required Materials

Lists the necessary tools and supplies for cleaning and maintenance procedures.

Cleaning Best Practices

Offers recommended practices for effective and safe cleaning of the instrument.

Prepare the Mass Spectrometer

Outlines steps to prepare the mass spectrometer before performing cleaning procedures.

Clean the Curtain Plate

Provides instructions for cleaning the curtain plate component of the ion source.

Clean the Front of the Orifice Plate

Details the procedure for cleaning the front of the orifice plate.

Put the Mass Spectrometer Back in Service

Guides the user on reassembling and returning the mass spectrometer to operation.

Empty the Source Exhaust Drain Bottle

Explains how to safely empty the source exhaust drain bottle.

Inspect the Roughing Pump Oil Level

Details how to check the oil level in the roughing pump.

Storage and Handling

Provides guidelines for storing and handling the mass spectrometer system.

Service and Maintenance — Ion Source

Ion Source Handling

Describes how to safely handle the ion source, noting hot surfaces.

Remove the Ion Source

Step-by-step guide for safely removing the ion source from the mass spectrometer.

Clean the Ion Source Surfaces

Instructions for cleaning the exterior surfaces of the ion source.

Clean the Probe

Details the procedure for flushing and cleaning the ion source probes.

Remove the Probe

Step-by-step guide for safely removing the probe from the ion source.

Replace the Electrode

Instructions for replacing the electrode within the ion source probe.

Replace the Corona Discharge Needle

Guide for replacing the corona discharge needle in the ion source.

Replace the Sample Tubing

Instructions for replacing the sample tubing of the ion source.

Storage and Handling

Provides guidelines for storing and handling the ion source component.

Mass Spectrometer Troubleshooting

Calibration Ions and Solutions

Lists calibration ions, solutions, and tuning frequencies for the system.

Principles of Operation — Ion Source

Explains the principles of Electrospray Ionization (ESI) and APCI modes.

Electrospray Ionization Mode

Describes how Electrospray Ionization (ESI) works to generate ions.

APCI Mode

Explains the process and suitability of Atmospheric Pressure Chemical Ionization (APCI).

APCI Ionization Region

Details the location and process within the APCI ionization region.

Ion Source Optimization

Provides detailed steps for optimizing ion source parameters for performance.

TurboIonSpray Probe Optimization

Steps to optimize the TurboIonSpray probe for best signal-to-noise.

APCI Probe Optimization

Steps to optimize the APCI probe for best signal-to-noise.

Adjust the Position of the Corona Discharge Needle

Guide for adjusting the corona discharge needle position for optimal ionization.

Optimize the APCI Probe Position

Steps to optimize the APCI probe position for sensitivity and stability.

Optimize the Nebulizer Current

How to adjust nebulizer current for optimal signal in APCI.

Optimize the APCI Probe Temperature

Guide for setting the optimal temperature for the APCI probe.

Source Parameters and Voltages

Details recommended operating parameters and voltages for ion sources.

TurboIonSpray Probe Parameters

Recommended operating conditions for the TurboIonSpray probe at different flow rates.

APCI Probe Parameters

Recommended operating parameters for the APCI probe.

Parameter Descriptions

Explains source-dependent parameters like gases, temperature, and voltage.

Probe Position

Discusses how probe position affects analysis sensitivity.

Solvent Composition

Lists commonly used solvents and modifiers for the ion source.

Glossary of Symbols

Glossary of Warnings

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