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Thermo Scientific NanoDrop 1000 V3.7 User Manual

Thermo Scientific NanoDrop 1000 V3.7
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NanoDrop 1000 Spectrophotometer
V3.7 User’s Manual

Table of Contents

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Thermo Scientific NanoDrop 1000 V3.7 Specifications

General IconGeneral
Protein Concentration Range (A280)0.1 - 100 mg/mL
ConnectivityUSB
Sample Volume1-2 µL
Concentration Range (dsDNA)2-3700 ng/µL
Absorbance Precision0.002 A (at 0.76 A)
Measurement Time<5 seconds
DisplayLCD
Power Supply100-240 VAC
Path Length0.2 mm (automatically adjusted)

Summary

Overview

Instrument Description

Describes the Thermo Scientific NanoDrop 1000 Spectrophotometer's features and capabilities.

Operation

Explains the basic process and steps involved in using the NanoDrop 1000 Spectrophotometer.

Applications

Lists the various applications and types of measurements the NanoDrop 1000 Spectrophotometer is suited for.

Initial Set Up

Computer Requirements

Specifies the necessary PC hardware, operating system, and software for the NanoDrop.

Software Installation

Provides a step-by-step guide for installing the NanoDrop software onto a computer.

Cable Connections

Details how to connect the NanoDrop 1000 Spectrophotometer to a PC and power source.

General Operation

The Sample Retention System

Explains the basic use and functionality of the instrument's sample retention system.

Cleaning the Sample Retention System

Procedures for cleaning the instrument's measurement pedestals to prevent carryover.

Sample Size Requirements

Details the recommended sample volumes for accurate and reproducible measurements.

Utilities and Diagnostics Module

Module for confirming instrument performance and troubleshooting operational issues.

Common Module Functions

Measure (F1)

How to initiate a sample measurement using the Measure button or F1 key.

Blank (F3)

How to perform a blank measurement to establish a reference for subsequent samples.

Blanking Cycle Procedure

Step-by-step guide to perform a blanking cycle for consistent and accurate results.

Proteins & Labels

Fluorescent Dye Selection

How to select fluorescent dyes for Proteins & Labels analysis using the Dye/Chromophore Editor.

Protein BCA

Making BCA Measurements

Steps required to perform measurements using the BCA assay, including standard curve generation.

Protein Lowry

Sample Volume Requirements

Recommended sample volumes for Modified Lowry protein assay measurements.

Making Lowry Measurements

Steps required to perform measurements using the Modified Lowry assay.

Protein Bradford

Sample Volume Requirement

Recommended sample volumes for Bradford protein assay measurements.

Pedestal Reconditioning

Procedure to recondition pedestals for Bradford assay, particularly with surfactants.

Making Bradford Protein Measurements

Steps required to perform measurements using the Bradford assay.

Protein Pierce 660 nm

Making Pierce 660 nm Protein Measurements

Steps required to perform measurements using the Pierce 660 nm assay.

Measure Reference Sample

Measuring the reference sample (660 nm reagent only) for calibration.

Measure Standard Samples

Measuring standard samples to create a calibration curve for unknown quantitation.

Measure Unknown Samples

Measuring unknown samples and calculating concentrations using the generated standard curve.

Archived Data and Data Viewer

Importing Samples

Process for importing samples into the Data Viewer for viewing and analysis.

Calibration Check

Calibration Check Procedure

Steps to perform the calibration check using CF-1 fluid to verify pathlength accuracy.

Adding Water and Blanking

Steps for adding deionized water and performing a blank measurement during calibration.

Preparing CF-1 Fluid

Instructions for shaking and preparing the CF-1 calibration fluid ampoule.

Opening CF-1 Ampoule

Procedure for carefully opening the CF-1 calibration fluid ampoule.

Performing Replicates

Measures 10 replicates and displays calibration check results on-screen.

Repeating Calibration with 2ul Samples

Procedure to repeat calibration with 2ul samples if initial check fails.

Procedure for Removal of Lint Build-up Under Solenoid

Steps to remove lint build-up from the solenoid area that can affect measurements.

Troubleshooting

Error USB2000

Troubleshoots the USB2000 error indicating connection problems; includes confirming connection, running USB Reset, and using USBView.

Connection Error

Addresses errors from disrupted USB connections, suggesting 'Retry', checking power management, and static discharge.

Signal Error

Addresses Signal Error indicating low light or detector issues; includes performing an Intensity Check.

UV Wavelength Signal Intensity is Low

Addresses low UV detector signal, likely due to dried sample, and provides cleaning procedures.

Saturated Detector

Error message indicating the detector is saturated, possibly from dried sample.

High Integration Times Error

Error due to high integration times, often from dried sample, requiring cleaning.

Liquid Column Breakage Warning

Warning when short path absorbance is not within tolerance of long path, likely due to unconditioned pedestals.

Reconditioning Pedestals

Procedures for reconditioning pedestals using PR-1 or lab wipes to fix column issues.

Error: Code 8

Details troubleshooting steps for Error Code 8, relating to Windows account access rights.

Error Code 8 Details

Explains Error Code 8 relates to Windows account access rights and file permissions.

Missing LabView Runtime Engine

Error when LabView Runtime engine is missing or corrupted, requires reinstallation.

Report Format Loading Error

Error due to lack of write access or moved report format files, requires admin check or reinstallation.

Error 9000

Error 9000 occurs when passwords.log file is missing or corrupt; requires reinstallation.

Error 9003

Error 9003 indicates monitor resolution is below required 1024x768.

Low Detector Bias Error

Occurs when software detects a problem with the detector.

OOIDRV Timeout Error

Error when a necessary file is deleted during software uninstallation.

EZUSB.SYS Not Found Error

Error when EZUSB.SYS file cannot be found during installation.

Ensuring Sample Accuracy and Reproducibility

Tips to ensure representative results: clean surfaces, correct sample size, sample prep.

Confirm Instrument Accuracy with CF-1

Checking instrument performance with a CF-1 calibration standard.

Unusual Spectrum

Addresses jagged spectra, possibly due to detector saturation or high integration time.

Maintenance and Warranty

Cleaning Measurement Pedestals

Procedures for cleaning the instrument's measurement pedestals after each use.

Pathlength Calibration Check

Verifying pathlength accuracy every six months using CF-1 calibration fluid.

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