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SCIEX Triple Quad 6500 Series User Manual

SCIEX Triple Quad 6500 Series
195 pages
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5500 Series of Instruments
System User Guide
December 2017RUO-IDV-05-6768-A

Table of Contents

Questions and Answers:

SCIEX Triple Quad 6500 Series Specifications

General IconGeneral
Mass Analyzer TypeTriple Quadrupole
Dynamic Range> 6 orders of magnitude
Ionization ModesPositive and Negative
Mass Range5 to 2000 m/z
Ionization SourceElectrospray Ionization (ESI), Atmospheric Pressure Chemical Ionization (APCI)
WeightApproximately 150 kg
SoftwareAnalyst® Software

Summary

Operational Precautions and Limitations

General Safety Information

General safety precautions and warnings for preventing personal injury and system damage.

Electrical Precautions

Safety measures related to electrical hazards, AC mains supply, and grounding.

Chemical Precautions

Safety guidelines for handling chemicals, system fluids, and waste disposal.

Principles of Operation

Operating Instructions — Sample Workflows

Sample Acquisition Workflow

Details the process of creating projects, acquisition methods, batches, and running samples.

Operating Instructions—Hardware

Start Up the System

Provides essential safety warnings and initial steps for powering on the instrument.

Shut Down and Vent the System

Procedures for safely shutting down and venting the instrument, including safety precautions.

Integrated Syringe Pump Operation

Detailed instructions on adjusting the syringe pump position and related safety warnings.

Operating Instructions — Hardware Profiles and Projects

Hardware Profiles

Explains how hardware profiles configure the system and connect peripheral devices.

Create a Hardware Profile

Step-by-step instructions for creating and activating a new hardware profile.

Add Devices to a Hardware Profile

Process for adding and configuring peripheral devices within a hardware profile.

Tune and Calibrate

Verify Instrument Performance

Procedure to verify or adjust the mass spectrometer's performance using tuning and optimization tools.

Automatic Optimization

Optimize for Analyte Using Infusion

Step-by-step guide for performing automatic MS/MS optimization using infusion.

Optimize for Analyte Using FIA

Step-by-step guide for optimizing parameters using Flow Injection Analysis (FIA).

Operating Instructions — Acquisition Methods

Create an Acquisition Method

Detailed steps for using the Acquisition Method Editor to create or modify methods.

Operating Instructions — Analyze and Process Quantitative Data

Quantitation Methods

Details the creation and application of quantitation methods using wizard, build, or quick quant tools.

Peak Review and Manual Integration

Guides users on reviewing identified peaks and manually adjusting integration parameters.

Calibration Curves

Explains how to generate, view, and overlay calibration curves for quantitative analysis.

Operating Instructions — Analyze and Explore Data

Reporter Software

Operating Instructions — Batches

Create and Submit a Batch

Workflow for creating and submitting sample batches for automated data acquisition.

Equilibrate the System

Procedure to equilibrate the mass spectrometer before starting sample acquisition or batch runs.

Service and Maintenance Information

Cleaning Procedures

Detailed instructions for cleaning system surfaces, front-end, curtain plate, and orifice plate.

Mass Spectrometer Troubleshooting

System Issues and Corrective Actions

A table outlining common system symptoms, their possible causes, and corrective actions.

Appendix A Operating Instructions — Manual Compound Optimization

Manually Optimize an Analyte

Step-by-step guide for manually optimizing parameters for an analyte using various scan types.

Manually Optimize Ion Source and Gas Parameters

Procedure for manually tuning ion source and gas settings for optimal compound ionization.

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