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ThermoFisher Scientific QuantStudio 6 Pro User Manual

ThermoFisher Scientific QuantStudio 6 Pro
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For Research Use Only. Not for use in diagnostic procedures.
QuantStudio
6 Pro and 7 Pro Real-Time PCR
Systems
USER GUIDE
Publication Number MAN0018045
Revision E.0

Table of Contents

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ThermoFisher Scientific QuantStudio 6 Pro Specifications

General IconGeneral
Instrument TypeReal-Time PCR System
Number of Channels6
Detection MethodFluorescence
High-Resolution MeltYes
Temperature Accuracy±0.25°C
Temperature Range4°C to 100°C
ConnectivityEthernet, USB
SoftwareQuantStudio Design and Analysis Software
Supported ApplicationsGene Expression, Genotyping, Copy Number Variation, miRNA, Protein Detection
Optical SystemLED-based
Power Requirements100-240 VAC, 50/60 Hz
Sample Capacity96-well
Block Format96-well

Summary

CHAPTER 1 Product information

Network and password security requirements

Details network configuration, security settings, and password policies.

Instrument hardware description

Describes the physical components and features of the instrument.

Hands-free features

Covers facial authentication and voice activation functionalities.

Software description

Explains the instrument's software interface and components.

Types of runs

Details various types of PCR runs supported by the instrument.

System template file names

Lists and describes system template file names for different blocks.

Workflow

Outlines the typical workflow for running experiments on the instrument.

CHAPTER 2 Get started

Precautions for use

Details safety precautions and hazards associated with instrument use.

Installation and instrument verification

Describes the initial installation and verification process.

Overview of guest access

Explains the limitations and features of guest access mode.

Sign in

Instructions for signing into the instrument profile.

Enable or disable the microphone

How to manage the instrument's microphone for voice commands.

Use voice commands

Details how to use voice commands for hands-free operation.

Sign out

Procedures for signing out of the instrument.

CHAPTER 3 Create and run plates on the instrument

Options to run a plate

Overview of how to initiate a plate run.

Create and run a plate from a system template or a saved plate file

Steps to create and start a run using templates or saved files.

Load a plate into the instrument

Instructions for loading a plate into the instrument drawer.

Unload a plate from the instrument

Procedure for removing a plate from the instrument.

CHAPTER 4 Edit a plate before starting a run

Overview of a template file with restricted editing

Explains template files with restricted editing properties.

Options to edit the properties of a plate file

Details how to edit plate file properties like sample setup or export settings.

Options to edit the method of a plate file

Describes editing method parameters like temperature, time, and cycles.

CHAPTER 5 Options for a run

Screens available during a run

Navigating between method, amplification plot, and time remaining screens.

Edit a plate file during a run

Modifying sample and target information after a run has started.

Pause an instrument run

Temporarily stopping a run to add reagents or edit cycles.

Stop an instrument run

Terminating an instrument run before completion.

View the method during a run

Displaying the current run's method parameters.

View real-time data and plots during a run

Monitoring amplification plots and data during an active run.

View the time remaining during a run

Checking the estimated time left for an ongoing run.

Lock the touchscreen during a run

Preventing unintended changes by locking the touchscreen.

Instrument Schedule

Managing instrument reservations for scheduled runs.

CHAPTER 6 View and manage files

Manage plate files

Operations for copying and deleting plate files.

Copy plate files

Transferring plate files to different locations.

Delete plate files

Removing plate files from the instrument or storage locations.

Manage data files

Operations for viewing and deleting data files.

CHAPTER 7 Calibrate and verify instrument performance

Instrument and block calibration

Explains calibration procedures for the instrument and interchangeable blocks.

Calibration and verification schedule

Recommends frequencies for performing calibrations and verifications.

Calibration descriptions

Explains the purpose and pass criteria for different calibration types.

View the calibration status and set reminders

How to check calibration status and set reminders on the instrument.

Export a calibration report

Generating and exporting calibration status reports.

Perform ROI/uniformity, background, and dye calibrations

Guides through performing ROI/uniformity, background, and dye calibrations.

Perform verification using RNase P plates

Steps for performing instrument verification with RNase P plates.

Calibrate custom dyes

Procedures for calibrating custom dyes for specific assays.

Calibrate for a custom melt curve run

Calibration process for custom melt curve analysis runs.

CHAPTER 8 Manage profiles

Require sign-in

Configuring the instrument to require user sign-in.

Recommended order to set up profiles

A suggested sequence for creating instrument and Connect profiles.

Overview of local instrument profiles and Connect profiles

Compares local profiles with Connect profiles and their features.

Connect instrument profile roles and functions

Defines roles (Standard, Administrator) and their associated functions.

Test the connection to the Connect platform

Verifying the instrument's connection to the Connect platform.

Link the instrument to your Connect account

Steps to connect the instrument to a Thermo Fisher Connect account.

Create a new local instrument profile

Creating a user profile stored locally on the instrument.

Link a local profile to a Connect profile

Associating a local instrument profile with a Connect account.

Unlink a Connect account

Procedures for disconnecting the instrument from a Connect account.

If you link when you are signed in to the instrument

Describes the profile linking process when already signed in.

If you link when you are not signed in to the instrument

Describes profile linking when not signed in to the instrument.

Manage individual instrument profiles

Managing user profiles on the instrument.

Manage all instrument profiles as an administrator

Administrator tasks for managing all user profiles on the instrument.

CHAPTER 9 Use the instrument with the Security, Auditing, and E-signature (SAE) v2.0 module

Overview of the instrument features when the SAE module is enabled

Lists instrument features unavailable when SAE is active.

Security, Auditing, and E-signature (SAE) v2.0 module functions

Details the functions controlled, audited, and signed within the SAE module.

Security, Auditing, and E-signature (SAE) v2.0 module roles

Defines the roles (Administrator, Scientist, Technician) within the SAE module.

Dialog boxes in the SAE module

Shows examples of dialog boxes and prompts used in the SAE module.

Profiles when the SAE module is enabled

Explains profile availability when the SAE module is active.

SAE-enabled system components

Lists system components compatible with SAE functions.

Enable SAE functions

Step-by-step guide to enabling SAE across system components.

Disable SAE on the instrument (administrator only)

Procedure for disabling the SAE module on the instrument.

Sign in as a local administrator with SAE enabled

How local administrators sign in when SAE is enabled.

Sign in with SAE enabled

Steps for signing into the instrument with an SAE account.

Sign out with SAE enabled

Procedures for signing out when SAE is enabled.

Change your SAE account password on the instrument

Modifying the SAE account password directly on the instrument.

Sign a plate setup

Applying an electronic signature to a plate setup.

Enter an audit reason

Providing a reason for changes made that require auditing.

View signing records for a plate file

Accessing records of electronic signatures applied to plate files.

View audit records

Accessing audit logs via desktop software or Administrator Console.

Use the instrument when the SAE server is offline

Operating the instrument when the SAE server is unavailable.

E-signature requirements to start a run

Understanding when electronic signatures are needed to start a run.

SAE error messages and actions

Troubleshooting common SAE error messages.

CHAPTER 10 Maintain the instrument

Install a block

Procedure for installing an interchangeable block into the instrument.

Change the block

Steps to replace the instrument's installed block.

Remove the block

How to safely remove the instrument block.

Decontaminate the sample block

Cleaning procedures to remove fluorescent contaminants from the sample block.

Replace the instrument fuses

Instructions for safely replacing instrument fuses.

Power on or off, store, and move

Procedures for powering the instrument on/off, storing, and moving it.

CHAPTER 11 Configure the instrument settings

View the instrument details

Displays instrument information like model, serial number, and software version.

Configure the instrument settings

Accesses various settings for instrument configuration.

Configure maintenance and service settings

Accesses settings for instrument maintenance, support, and software updates.

Configure the instrument for the hands-free features

Enabling and configuring facial authentication and voice commands.

Manage the run history

Viewing, exporting, or deleting past run records.

Manage the file name convention of the data file

Customizing how data files are named.

View the notifications

Accessing and viewing instrument notifications.

Enable and disable home screen notifications

Controlling whether notifications appear on the home screen.

Set up email notifications

Configuring email alerts for specific instrument events.

Clear the notifications

Removing notifications from the instrument display.

APPENDIX A Instrument specifications and layout

Instrument dimensions

Physical dimensions and weight of the instrument.

Instrument and computer clearances

Required space around the instrument and computer for installation/maintenance.

Configured system dimensions

Space requirements for the instrument and computer system setup.

Light guidelines

Recommendations for proper lighting for facial authentication.

Electrical requirements

Details power supply, voltage, and consumption specifications.

Environmental requirements

Specifies operating conditions like altitude, humidity, and temperature.

APPENDIX B Connect the instrument to a network

Connect the computer to the instrument directly or to a LAN

Steps for direct wired connection to a computer or local area network.

Connect the instrument to a wired network

Configuring a wired network connection for the instrument.

Connect the instrument to a wireless network

Setting up a wireless network connection for the instrument.

Instrument and computer connections

Diagram illustrating physical connections between instrument and computer.

Download and install the desktop software

Instructions for obtaining and installing the QuantStudio desktop software.

Networking

General information and best practices for instrument networking.

APPENDIX C Parts and materials

Kits, consumables, accessories, and reagents

Lists available kits, consumables, accessories, and reagents.

96-well 0.2 mL consumables

Catalog numbers and amounts for 96-well 0.2 mL consumables.

384-well consumables

Catalog numbers and amounts for 384-well consumables.

96-well 0.1 mL consumables

Catalog numbers and amounts for 96-well 0.1 mL consumables.

Accessories

Lists additional accessories, tools, and supplies.

APPENDIX D Safety

Symbols on this instrument

Explains hazard symbols and attention words used on the instrument.

Instrument safety

General safety precautions for operating the instrument.

Safety and electromagnetic compatibility (EMC) standards

Lists standards related to instrument safety and EMC compliance.

Chemical safety

Guidelines for safe handling, storage, and disposal of chemicals.

Biological hazard safety

Precautions for working with potentially biohazardous materials.

APPENDIX E Documentation and support

Related documentation

Lists related documents, guides, and manuals for the system.

Customer and technical support

Information on how to obtain support and contact customer service.

Limited product warranty

Details the terms and conditions of the product warranty.

Related product manuals