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Zeiss LSM710 User Manual

Zeiss LSM710
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Zeiss LSM710 User Guide pg. 1
Zeiss LSM710 Confocal User Guide 2023-05-19 edition
- Users must be trained and approved. Work with others until you have mastered the system. Ask JM for help.
- Use iLab for reservations, maximum of 4-hours at a time.
- Do not use gloves to touch confocal switches or the computer.
- Please ask Dr. Murray immediately you notice any issues with the instrument or if you have forgotten any procedures
(jwm2175@cumc.columbia.edu or slack workspace).
Here’s a good but long video demonstration of a LSM710 microscope:
https://www.youtube.com/watch?v=_sCnAPIJGlQ
Zeiss confocal knowledge base
https://www.zeiss.com/microscopy/us/local/zen-knowledge-base-home/zen-knowledge-base-lsm-800-900-980.html
AVOID THESE DAMAGING EVENTS:
Oil dripping down objective lenses. Use small amount. Gently wipe off oil from lens when there is too
much, also wipe sides of lens. Use only lens paper.
Bumping Objective Lenses with the stage Insert or your sample (glass slide) always handle the
microscope and slides gently.
Getting nail polish or other damaging substances on the objectives microscope components (e.g. Oil on
Dry lenses).
Using very bright laser intensities (>20% will usually cause strong photobleaching).
Frequently turning on and off the lasers.
Turning off the power before fan has cooled the argon laser.
How to Start Up the LSM710
Remove dust cover from microscope, inspect the area. See me (8-801F black bldg.) or email
jwm2175@ if you find problems.
Make sure LASOS panel little silver switch (6) is on standby (down)
Turn on: (see images below)
(1) Main switch, (2) System/PC, (3), Components
(4) Computer (if not already on).
(5) LASOS argon key from off (0) to on (-)
(6) LASOS panel silver switch to “run”
(7) X-cite mercury lamp, green switch
- Login to computer with your UNI
- Double click ZEN BLACK (not blue!) software, and click “Start”.
(Zen Blue is for analysis only)
It takes ~10min for the green LASOS light to turn on, indicating stabilization of the laser. Make sure
the red light is not on, indicating laser power is too high. If red, turn counterclockwise to green.
Save your images to the D: Drive (this is temporary storage and will be deleted)
Transfer your data to your own external hard drive*No data is allowed on the C: drive and will be
deleted. You can temporarily store images in your folder such as, D: \ USER\ “your folder”. All data
may be deleted after 2 weeks. *Use multiple backups or cloud-based data storage.
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Zeiss LSM710 Specifications

General IconGeneral
Laser Wavelengths405 nm, 458 nm, 488 nm, 514 nm, 561 nm, 633 nm
Resolution (pixels)Up to 4096 x 4096 pixels
Microscope TypeConfocal Microscope
Scanning SpeedUp to 8 frames per second at 512 x 512 pixels
Scanning MethodGalvanometric Mirrors
SoftwareZEN software
Objective LensesVarious objectives available (5x to 100x, air, water, oil immersion)

Summary

AVOID THESE DAMAGING EVENTS

How to Start Up the LSM710

System Power On Sequence

Details the steps for powering on the LSM710 microscope, including main, system, component, and laser switches.

Location of the On / Off Switches

Shut Down the Zeiss LSM710 Confocal

Argon Laser Cool Down Procedure

Emphasizes the critical 5-minute cool-down period for the Argon laser after shutdown to prevent damage.

System Power Off Sequence

Lists the correct order for turning off the LASOS panel, argon key, computer, mercury lamp, and main switches.

Common Problems with Zen Startup

Troubleshooting RealTime Connection Issues

Provides solutions for when the RealTime computer is not communicating with the main computer.

Resolving Zen Software Device Conflicts

Offers steps to resolve errors indicating devices are used by other software in Zen.

Using Zen Software to Run the LSM710

Navigating Zen Software Modes

Explains the 'Locate' mode for finding samples and the 'Acquisition' mode for confocal scanning.

Optimizing Acquisition Settings

Covers key settings like frame size, scanning speed, averaging, bit depth, laser power, and gain for image quality.

Using Zen Software to Run the LSM710

Advanced Acquisition Settings and Tips

Details settings for smart setup, pinhole, scanning direction, light path, tile scan, Z-stack, and objective lenses.

Performing Tile Scans

Guides users on activating tile scan, defining scan areas with overlap, and initiating the experiment.

Stitching Acquired Images

Explains how to stitch multiple acquired images together using the processing tab in Zen software.

Analysis of Your Data

Recommended Image Analysis Software

Lists free and paid software options for analyzing confocal microscopy images, including Fiji/Image J and CellProfiler.

Contact and Support Information

Provides contact details for assistance with the instrument, procedures, or image analysis projects.

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