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Thermo Scientific Applied Biosystems QuantStudio 6 Pro User Manual

Thermo Scientific Applied Biosystems QuantStudio 6 Pro
241 pages
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For Research Use Only. Not for use in diagnostic procedures.
QuantStudio
6 Pro Real-Time PCR System
and QuantStudio
7 Pro Real-Time PCR
System
USER GUIDE
Publication Number MAN0018045
Revision G.0

Table of Contents

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Thermo Scientific Applied Biosystems QuantStudio 6 Pro Specifications

General IconGeneral
Instrument TypeReal-Time PCR System
Channels6
Temperature Range4–100°C
Light SourceLED
Detection TechnologyCCD camera
Temperature Accuracy±0.25°C
Heating RateUp to 6.5°C/sec
Sample Capacity96-well
Block Format96-well or 384-well
Reaction SpeedFast
DyesFAM, SYBR Green, VIC, ROX
Excitation SourcesLED
ConnectivityEthernet, USB
Power Requirements100–240 VAC, 50/60 Hz
Ramp Rate (max)6.5°C/sec

Summary

CHAPTER 1 Product information

Instrument hardware description

Describes the physical components and features of the QuantStudio 6 Pro and 7 Pro systems.

Software description

Details the instrument's home screen interface, features, and connectivity options.

Types of runs

Explains different real-time PCR run types including Standard Curve, Genotyping, and Melt Curve.

CHAPTER 2 Get started

Precautions for use

Highlights critical safety warnings for handling the instrument and its components.

Sign in

Covers procedures for signing into the instrument using a PIN or facial authentication.

Use voice commands

Explains how to use the instrument's voice command feature for hands-free operation.

CHAPTER 3 Create and run plates on the instrument

Options to run a plate

Guides on creating and initiating runs using system templates or saved plate files.

Load a plate into the instrument

Provides step-by-step instructions for correctly loading plates into the instrument drawer.

Load a TaqMan™ Array Card into the instrument

Details the process for inserting TaqMan™ Array Cards into the instrument.

CHAPTER 4 Edit a plate before starting a run

Options to edit the properties of a plate file

Explains how to modify plate file properties like sample setup and export settings.

Options to edit the method of a plate file

Covers editing thermal cycling parameters, steps, stages, and data collection points.

Options to edit the well details of a plate file

Describes how to edit sample names, targets, reporter dyes, and reagents for specific wells.

CHAPTER 5 Options for a run

Edit a plate file during a run

Instructions on how to modify sample and target information while a run is in progress.

Pause an instrument run

How to temporarily halt a run, for example, to add reagents.

Stop an instrument run

Procedure for terminating an ongoing instrument run.

CHAPTER 6 View and manage files

Manage plate files

Instructions for copying and deleting plate files from the instrument.

Manage data files

Covers viewing QC status, amplification plots, and transferring data files.

CHAPTER 7 Calibrate and verify instrument performance

Instrument and block calibration

Explains the necessity and process of calibrating instrument and block combinations.

Calibration and verification schedule

Details recommended frequencies for various calibration and verification procedures.

Perform ROI/uniformity, background, and dye calibrations for plate blocks

Step-by-step guide for performing essential plate block calibrations.

Perform verification using RNase P plates

Outlines the process for verifying instrument performance using RNase P plates.

CHAPTER 8 Manage profiles

Require sign-in

How to configure instrument settings to enforce user sign-in.

Link the instrument to your Connect account

Steps to connect the instrument to a Thermo Fisher Connect account for enhanced features.

Manage individual instrument profiles

Procedures for creating, managing, and setting up facial authentication for user profiles.

CHAPTER 9 Use the instrument with the Security, Auditing, and E-signature (SAE) v2.0 module

Enable SAE functions

Guide to enabling SAE functions, configuring application profiles, and connecting to the SAE server.

Disable SAE on the instrument (administrator only)

Instructions for administrators to disable SAE mode on the instrument.

Sign in with SAE enabled

Process for users to sign in to the instrument when SAE mode is active.

CHAPTER 10 Maintain the instrument

Install a block

Instructions for installing a new block into the instrument.

Decontaminate the sample block

Detailed procedures for cleaning and decontaminating the sample block to remove contaminants.

Replace the instrument fuses

Steps for safely replacing instrument fuses, including materials and procedures.

CHAPTER 11 Configure the instrument settings

Configure maintenance and service settings

Covers requesting technical support, instrument service, and performing self-verification tests.

Update the software

Guidance on checking for, downloading, and installing software updates.

Back up the instrument

Instructions on backing up instrument settings and profiles to USB or Connect.

Restore a backup of the instrument

Procedures for restoring instrument settings and profiles from a backup.

APPENDIX A Instrument specifications and layout

Electrical requirements

Details power requirements, receptacle needs, and voltage tolerances for instrument operation.

Environmental requirements

Specifies acceptable conditions for installation site, altitude, humidity, and temperature.

APPENDIX B Connect the instrument to a network

Download and install the desktop software

Steps for obtaining and installing the QuantStudio desktop software on a computer.

Networking

Provides general networking information and supported connection options.

APPENDIX C Detailed procedures for preparation of a TaqMan™ Array Card

Load the PCR reaction mix

Step-by-step guide for loading PCR reaction mix into TaqMan™ Array Card reservoirs.

Centrifuge the card

Instructions on configuring and operating the centrifuge for card preparation.

Seal the card

Detailed steps for using the TaqMan™ Array Card Sealer to seal the card properly.

APPENDIX D Parts and materials

96-well 0.2 mL consumables

Lists consumables and catalog numbers for 96-well, 0.2 mL plate formats.

96-well 0.1 mL consumables

Lists consumables and catalog numbers for 96-well, 0.1 mL plate formats.

384-well consumables

Lists consumables and catalog numbers for 384-well plate formats.

TaqMan™ Array Card consumables

Lists kits and consumables specifically for TaqMan™ Array Cards.

APPENDIX E Safety

Instrument safety

General safety guidelines for operating the instrument, covering electrical, laser, and moving parts hazards.

Chemical safety

Precautions for handling chemicals, waste disposal, and potential hazards.

Biological hazard safety

Guidelines for working with potentially biohazardous materials and required safety equipment.

APPENDIX F Documentation and support

Customer and technical support

Information on how to contact Thermo Fisher Scientific for product support and technical assistance.

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