Exercise 2 – Develop a Dynamic MRM method from an MRM acquisition data file or an MRM method
Task 1. Create a batch file from an existing MRM data file
34 Agilent 6400 Series Triple Quad LC/MS Familiarization Guide
2 Create a method for that batch 
using MRM data.
a Click Method > New > New Method 
from Acquired MRM Data.
b Select the SulfamixMRM_10.d data 
file.
c Click Open.
3 Set the Concentration Setup, 
Qualifier Setup, and Calibration 
Curve Setup.
• Add calibration level 1 with a 
concentration of 10000.
• Set the Uncertainty to Relative 
for all qualifiers.
• Set the Curve Fit to Linear.
• Set the Curve Fit Origin to 
Include.
• Set the Curve Fit Weight to 
None.
a Select Concentration Setup in the 
Manual Setup Tasks section in the 
Method Tasks pane.
b Select the first compound in the table.
c Right-click the compound row and 
click New Calibration Level from the 
shortcut menu.
d Enter 
A1 in the Level column and 10 
in the Conc. column.
e Right-click in the Level box and click 
Copy Calibration Levels To.
f Click Select All. Click OK.
g Select Qualifier Setup in the Manual 
Setup Tasks section in the Method 
Tasks pane.
h Verify that the Uncertainty is Relative.
i Select Calibration Curve Setup in the 
Manual Setup Tasks section in the 
Method Tasks pane.
j Set Curve Fit to Linear for all 
compounds. 
k Set CF Origin to Include for all 
compounds.
l Set CF Weight to None for all 
compounds.
• Refer to the online Help in the 
Quantitative Analysis program for 
additional help on these tasks.
• You can also click Method > Copy 
Calibration Levels To to display the 
Copy Calibration Levels To dialog 
box.
• To enter the same value in all cells 
in a column, you can change the 
value in the first row, and then 
right-click that value in the first row 
and click Fill Down.
• The compound names in 
Quantitative Analysis need to 
exactly match the Compound Name 
in the QQQ Acquisition program. If 
you capitalized the Compound 
Name in the Data Acquisition 
program, then you need to make 
sure that the Name in the 
Quantitative Analysis program is 
also capitalized.
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