16 Agilent 6400 Series Triple Quad LC/MS Concepts Guide
2 Inner Workings – Triple Quadrupole MS versus Single Quadrupole MS 
How a single quadrupole mass spectrometer works 
• The quadrupole mass analyzer is represented by a moving 
belt that serves to filter the ions as they pass through 
openings of various sizes. The ions pass from the funnel, 
through the filter, to the detector. Although in this image, 
ions that are smaller might fit through the openings, a 
quadrupole mass analyzer filters the ions so that only the 
“correct” ions pass through to the detector.
• The detector is represented by the collecting funnel below 
the filtering belt.
As the belt (the analyzer) moves, or the voltages on the rods are 
changed, ions with different m/z values are filtered through the 
mass spectrometer. 
As the analyzer moves from a small m/z value to increasingly 
larger values, a full MS scan is created. 
SIM – Selected Ion Monitoring If the belt does not move, the detector continues to monitor the 
same single m/z value over the entire scan period. This type of 
analysis is known as SIM. It is the most sensitive operating 
mode for a single quadrupole mass spectrometer. 
The scan period is selected (fixed) by the user. The user may set 
the dwell time to scan a specific mass range (e.g. m/z 50 to 
1000) or to remain on one selected ion (SIM) or to move to 
several selected ions during the scan period. The quadrupole 
mass filter is not scanned in this mode. The required RF/DC 
voltages are often set to filter a single mass at one time.
For comparison, see “How a triple quadrupole mass 
spectrometer works" on page 27.
Single quadrupole: SIM
To obtain the best sensitivity or quantitation, the single 
quadrupole is operated in SIM mode (Figure 3). The duty cycle 
is the measure of the instrument’s time actually devoted to 
measuring signals. In SIM mode, the single quadrupole analyzes 
the signal of a specific m/z ion almost all of the time. This 
results in nearly 100% acquisition during the duty cycle.