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Zeiss AxioObserver D1 User Manual

Zeiss AxioObserver D1
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Zeiss AxioObserver D1 Specifications

General IconGeneral
Microscope TypeInverted Microscope
SoftwareZEN software
Optical SystemInfinite optical system
IlluminationLED
Contrast MethodsPhase Contrast, DIC, Fluorescence
StageMotorized stage or manual stage
Camera CompatibilityVarious scientific cameras
Camera PortsC-mount
AutomationMotorized components available for automated imaging
ObjectivesPlan Apochromat and Plan Achromat
Filter SetsMultiple filter sets for fluorescence
Focus DriveMotorized focus drive
DimensionsVaries depending on configuration
WeightVaries depending on configuration

Summary

Start Up Procedure

Microscope Power On

Steps to power on the microscope and associated components.

Computer and Software Startup

Logging into the computer and opening the AxioVision software.

Shut Down Procedure

Sample and Objective Preparation

Cleaning the objective and setting the 10x objective.

System Power Down Sequence

Steps to shut down the computer, microscope, and lamp.

Final Microscope Covering

Properly covering the microscope after shutdown, avoiding the lamp housing.

Configuring Imaging Setup

Workarea and Acquisition Setup

Accessing and selecting multidimensional acquisition settings.

Experiment and Channel Configuration

Loading experiment setups and configuring imaging channels and colors.

Set Sample on Stage and Focus

Sample Preparation and Loading

Preparing the slide and placing it on the microscope stage.

Focusing and Centering

Bringing the specimen into focus and centering the area of interest.

Capturing an Image

Image Preview and Measurement

Using the Measure button for live preview and selecting display range.

Exposure Time Adjustment

Adjusting exposure time for optimal signal intensity.

Post-Acquisition Adjustments

Brightness and Contrast Tuning

Adjusting image brightness and contrast using histogram and properties.

Adding a Scale Bar

Inserting a scale bar for image measurement.

Saving Image Files

Saving captured images in the AxioVision format (.zvi).

Microscope Controls Overview

Display Screen Information

Details of the microscope's display screen elements.

Transmitted Light Controls

Controls for the transmitted light path and lamp.

Reflected Light Controls

Controls for the reflected light path and components.

Light Path Adjustments

Description of different light path configurations.

Microscope Objectives

Objective Specifications (10x, 20x, 20x)

Details on 10x, 20x A-Plan, 20x LD Plan-NeoFluar, and 20x Plan-Apochromat objectives.

Objective Specifications (40x, 63x, 5x)

Details on 40x, 63x, and 5x objectives including immersion and DIC.

Objective Specifications (100x)

Specifications for the 100x Plan-NeoFluar oil objective.

Filter Sets for Fluorescence

Transmitted Light Filter

Information regarding the transmitted light filter.

Filter Set 34 (DAPI/BFP)

Excitation, beam splitter, and emission wavelengths for DAPI/BFP.

Filter Set 38 (Cy2/GFP)

Excitation, beam splitter, and emission wavelengths for Cy2/GFP.

Filter Set 46 HE (YFP)

Excitation, beam splitter, and emission wavelengths for YFP.

Filter Set 45 (Cy3.5/mcherry)

Excitation, beam splitter, and emission wavelengths for Cy3.5/mcherry.

Filter Set 50 (Cy5)

Excitation, beam splitter, and emission wavelengths for Cy5.

Important User Information

FluoArc Lamp Usage Policy

Guidelines for using and turning the FluoArc lamp on/off.

Oil Immersion Objective Handling

Instructions for cleaning and using oil objectives.

Booking and Log Book Procedures

Rules for booking time and logging station usage.

Data Saving and Backup

Guidelines for saving and backing up experimental data.

Computer Usage and Immersion Oil Rules

Computer Usage Restrictions

Permitted uses of the computer for image acquisition only.

Immersion Oil Handling Best Practices

Detailed rules for proper immersion oil application and cleanup.

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