Scanning Output Folder Structure
[Date]_[Instrument Name]_[Scan#]_[Barcode]
[Barcode]
Config
Effective.cfg—Records config settings used during the scan.
Focus—Contains image files used to focus the scan.
Logs—Contains log files that list each step performed during the scan.
PreScanDiagnosticFiles
[Date_Time] Barcode Scan
ProcessedBarcode.jpg—Image of BeadChip barcode.
Scanning Diagnostics (log files)
PreScanChecks.csv—Records results of the automatic check.
GTC files—Genotype call files (1 file per sample).
IDAT files—[Optional] Intensity data files (2 files per sample; 1 each per channel).
Image files—Scan images for each sample, section, swath, camera, tile, and channel.
[Barcode]_sample_metrics.csv
[Barcode]_section_metrics.csv
ScanParameters.xml
Document # 1000000041922 v01
For Research Use Only. Not for use in diagnostic procedures.
63
NextSeq 550Dx Research Mode Instrument Reference Guide
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