Start the Scan
When the automated check is complete, select Start. The scan begins.
To configure the system to start the scan automatically after a successful check, see
Set Run Setup
Options
on page 13.
Monitor Scan Progress
1 Monitor scan progress using the BeadChip image. Each color on the image indicates the scanning
status.
u Light gray—Not scanned
u Dark gray—Scanned but not registered.
u Green—Scanned and registered successfully.
u Red—Scan and registration failed.
If registration fails, you can rescan samples that contain failed sections. See
BeadChip Scan Failure
on page 48.
2 Select the BeadChip image to toggle between a full view and a detail view of a selected sample.
u The full view shows the samples on the BeadChip and sections within each sample.
u The detail view shows each section within the selected sample.
Figure 24 BeadChip Image: Full View and Detail View
NOTE
Ending a scan is final. If you end the scan before the scan is complete, scan data are
not
saved.
Data Transfer
Data are queued for transfer to the scanning output folder when the scan is complete. Data are
temporarily written to the instrument computer. The temporary folder is deleted from the instrument
computer automatically when a subsequent scan is started.
Document # 1000000041922 v01
For Research Use Only. Not for use in diagnostic procedures.
32
NextSeq 550Dx Research Mode Instrument Reference Guide
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