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Applied Biosystems ViiA 7 Real User Manual

Applied Biosystems ViiA 7 Real
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ViiA™ 7 Real-Time PCR System
QUICK REFERENCE GUIDE
Note: For safety and biohazard guidelines, refer to the
“Safety” appendix in the Applied Biosystems ViiA
7Real-
Time PCR System User Guide (PN 4442661). For every
chemical, read the SDS and follow the handling
instructions. Wear appropriate protective eyewear, clothing,
and gloves.
In this guide
Description . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
Calibrate the ViiA
7 System . . . . . . . . . . . . . . . . . . . . . . . . . . 2
Perform an experiment . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
Maintain the ViiA
7 System. . . . . . . . . . . . . . . . . . . . . . . . . . 15
Power off the ViiA
7 System. . . . . . . . . . . . . . . . . . . . . . . . . 22
For details on operating and maintaining your ViiA
7 System, refer
to the Applied Biosystems ViiA
7 Real-Time PCR System User Guide
(PN 4442661).
Description
The Applied Biosystems ViiA
7 Real-Time PCR System uses
fluorescent-based polymerase chain reaction (PCR) reagents to
provide:
Quantitative research detection of target nucleic acid
sequences (targets) using real-time analysis.
Qualitative research detection of targets using post-PCR
(endpoint) analysis.
Qualitative analysis of the PCR product achieved by melt curve
analysis that occurs post-PCR.
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Applied Biosystems ViiA 7 Real Specifications

General IconGeneral
PlatformReal-Time PCR System
ManufacturerApplied Biosystems
ModelViiA 7 Real-Time PCR System
Number of Channels6
Excitation SourceTungsten-halogen lamp
Detection MethodFluorescence
MultiplexingUp to 6 targets
Temperature Range4-100°C
Temperature Accuracy±0.25°C
Thermal Uniformity±0.5°C
SoftwareApplied Biosystems ViiA 7 Software
ConnectivityUSB, Ethernet
Power Requirements100-240V, 50/60 Hz
Format96-well, 384-well
Reaction Volume Range10-100 µL
Optical SystemCCD camera
Sample Capacity96 or 384 samples per run

Summary

Description of the ViiA 7 System

Applied Biosystems ViiA 7 Real-Time PCR System Overview

Overview of the system's capabilities using fluorescent-based PCR for quantitative and qualitative analysis.

Calibrate the ViiA 7 System

Calibration Types

Lists various types of calibration for the ViiA 7 System, including ROI, background, and uniformity.

Materials Required for Calibration

Lists necessary materials for calibrating the instrument across different sample block types.

Fast 96-well Sample Block Calibration Materials

Specific calibration materials required for the Fast 96-well sample block.

Calibrate the Instrument

Prepare the Plate or Array Card for Calibration

Steps to prepare calibration plates or array cards before initiating the calibration process.

Start the Calibration Process

Instructions for initiating the calibration process within the ViiA 7 Software.

Load Plate or Array Card for Calibration

Guidance on correctly loading the prepared plate or array card into the instrument.

Start the Calibration Run

Steps to begin the actual calibration run on the ViiA 7 System.

Review and Complete Calibration

How to check calibration results and finalize the calibration process.

Perform an Experiment

Materials Required for Experiments

Lists all necessary materials for performing experiments on the ViiA 7 System.

Experiment Workflow Overview

Outlines the sequence of steps for designing and executing an experiment.

Design the Experiment Parameters

Steps to define experiment name, type, block type, and other properties.

Select Reagents for the Experiment

Guidance on choosing appropriate reagents based on the selected experiment type.

Define Instrument Run Properties

Setting up parameters like ramp speed and data collection points.

Define Targets, Samples, and Replicates

Specifying targets, samples, and their associated properties for the experiment.

Assign Targets and Samples to Wells

Mapping targets, tasks, and samples to specific wells on the plate/card.

Define the Run Method Parameters

Setting reaction volume, thermal profile, and cycling parameters for the experiment.

Save the Experiment File

Instructions on saving the designed experiment for future use or as a template.

Prepare Reactions for Experiment

Prepare Reaction Plate

Guidelines for preparing reaction plates, including reagent handling and dilution.

Prepare Reaction Array Card

Steps for preparing reaction array cards, including SNP preparation.

Seal the Plate

Load the Reaction Plate

Instructions for loading the prepared reaction plate into the instrument.

Apply Optical Adhesive Film

Detailed steps for applying optical adhesive film to seal the plate for optimal results.

Prepare the Array Card

Remove the Array Card

Steps to carefully remove the array card from its packaging.

Load Chemicals into Array Card Ports

Instructions on how to load reagents into the array card's fill reservoirs.

Pipette Fluid into Fill Reservoir

Guidance on dispensing fluid into the array card's fill reservoir correctly.

Centrifuge the Array Card

Steps for centrifuging the array card to ensure proper fill and reduce bubbles.

Seal the Array Card

Centrifuge Array Card (Continued)

Further instructions on centrifuging the array card for optimal results.

Seal the Array Card Using Fixture

Steps for sealing the prepared array card using a staker/sealer fixture.

Start and Monitor the Experiment

Load Plate or Array Card into Instrument

Instructions for loading the sealed plate or array card into the instrument.

View Analysis Reports

Amplification and Multicomponent Reports

Analyzing amplification and multicomponent data for insights and comparisons.

Raw Data and Quality Control Reports

Reviewing raw data, QC summaries, and identifying potential well issues.

Gene Expression and Specific Experiment Plots

Analyzing gene expression, genotypes, and specific experiment types.

Standard Curve and Melt Curve Analysis

Validating standard curves and reviewing melt curve data.

Export Results

Select Data for Export

Choosing data types, formats, and contents for experiment results export.

Start the Data Export Process

Initiating the data export and optionally saving export settings.

Maintain the ViiA 7 System

Instrument Maintenance Schedule

Recommended maintenance tasks based on frequency: weekly, monthly, semi-annually.

Accessories for Instrument Maintenance

Lists necessary accessories for maintaining different sample block types.

Decontaminate the Sample Block

Procedure to eliminate fluorescent contaminants from the ViiA 7 System sample block.

Materials Required for Decontamination

Lists materials needed for sample block decontamination, including cleaning solutions.

Handle the Sample Block Safely

Proper procedures for handling the sample block to prevent damage or contamination.

Clean the Sample Block

Remove the Sample Block

Step-by-step instructions for safely removing the sample block from the instrument.

Clean Contaminated Wells

Procedure for cleaning contaminated wells within the sample block.

Install the Sample Block Correctly

Guidance on correctly reinstalling the sample block into the instrument.

Verify Sample Block Cleaning Success

Verify Success with Ethanol Cleaning

Steps to verify decontamination using ethanol solution and background calibration.

Verify Success with Bleach Cleaning

Steps to verify decontamination using bleach solution and background calibration.

Change Instrument Parts

Calibration Order for Part Changes

Specifies the required order for performing calibrations after instrument part changes.

Change the Sample Block

Instructions for replacing the sample block with a different consumable format.

Install New Sample Block and Calibrate

Install New Sample Block

Steps to install a new sample block, ensuring correct seating.

Verify Sample Block Installation

How to confirm successful installation of a new sample block via software.

Perform Calibrations After Sample Block Change

Instructions to perform necessary calibrations after changing the sample block.

Change the Plate Adapter

Open Instrument Drawer for Adapter Change

Steps to open the instrument drawer to access the plate adapter.

Detach Existing Plate Adapter

Procedure for removing the existing plate adapter from the instrument.

Install New Plate Adapter

Steps to install a new plate adapter into the instrument's tray arm.

Change the Heated Cover

Remove Heated Cover

Instructions for safely removing the heated cover from the instrument.

Replace Heated Cover

Steps for installing a new heated cover, ensuring correct alignment.

Verify Heated Cover Installation

How to confirm successful installation of a new heated cover via software.

Perform Calibrations After Heated Cover Change

Instructions to perform necessary calibrations after changing the heated cover.

Power Off the ViiA 7 System

Perform Instrument Self Test

How to initiate and complete a self-test on the ViiA 7 System.

Run the Instrument Self Test

Steps to start and complete the instrument's self-test procedure.

Save Self Test Results to USB

Instructions for saving self-test results to a USB drive for analysis.

Return to Main Menu

Navigating back to the main menu after completing instrument operations.

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