Agilent 1100 Series LC/MSD Trap System Quick Start Guide 23
Set up an acquisition method
The following procedure lists the steps you take to set up an acquisition 
method to run a sample mixture in positive ESI mode. To practice these 
instructions using an HPLC with the ESI demo sample instead, see Chapter 2, 
“Set up and run acquisition methods” in the Familiarization Guide.
Step Detailed Instructions Comments
1 Load the default method, 
DEF_LCMS.M.
a In ChemStation, to load the default 
method, select Method > New 
LCMS method.
b Click OK.
c Check Status mode to verify that the 
source is ESI and ion polarity is 
positive.
• It is recommended that you start 
with this default method, make 
desired changes and save the new 
method from within ChemStation.
2 Prepare the sample.
• Use a test sample or the Tuning 
Mix in a concentration of 
1 to 10 ng/ul.
• Dissolve the sample in the mobile 
phase used for the analysis.
• If you are setting up for quantitation, 
the test sample is ideally the target 
analyte. If you are doing qualitative 
work, the test sample is ideally 
a representative of the class of 
compounds to be analyzed.
3 Prepare the syringe pump.
• Syringe pump flow rate at 300 
µl/h. (20 µl/h for nanospray)
• If infusion into LC flows, set LC 
flow rate at 100-500 µl/min.
a Draw the sample into a syringe.
b Insert the 
syringe into the syringe 
pump.
c Connect the tubing to the nebulizer.
d Adjust the syringe pump flow rate to 
300 µl/h. (20 µl/h for nanospray).
If infusing into LC flows, set LC 
pump rate in ChemStation.
• Be sure that no air bubbles are 
introduced into the syringe with the 
sample.
• If you are performing infusion work 
at low flow rates, use Figure 7. 
• If you are infusing into LC flows, use 
Figure 8.
• The optimal instrument parameters 
are determined with the actual flow 
rate to be used during the analysis.
Figure 7 Tubing from the Syringe Pump (1) to the Nebulizer (2)