illumina NextSeq 550Dx User Manual

packaging 17
rehybridization 46
swath number 60
tile numbering 61
tiles 59
types 1
folder location 23
formamide, position 6 22
G
GTC files 62
H
help
documentation 2
help, technical 69
I
icons
errors and warnings 4
status 4
Illumina Proactive monitoring service 51
imaging compartment 3
imaging, 2-channel sequencing 55
indexing considerations 56
input files, scan
cluster files 27, 49
DMAP folder 27
DMAP folder, download 28
manifest files 27, 49
instrument
avatar 12
configuration settings 50
mode indicators 12
nickname 12
power button 5
reboot 40
restart 41
shut down 40-41
start up 11
instrument maintenance
consumables 14
instrument wash 35
intensities 55
InterOp files 43, 59
K
keyboard 12
L
laboratory-grade water guidelines 14
lane numbering 60
lane pairs 60
locs files 59
log files
GlobalLog 54
LaneNLog 54
M
maintenance, preventive 35
manage instrument
shut down 41
metrics
base calling 55
cluster density cycles 25
intensity cycles 25
O
online training 2
output files 59
output files, scan
GTC, IDAT 62
output files, sequencing 59
P
passing filter (PF) 56
phasing, prephasing 55
Phred algorithm 56
post-run wash 26
power button 5, 11
power switch 11
pre-run check 24, 31
pre-run check errors 44
preventive maintenance 35
primer rehybridization 46
purge consumables 13
Q
Q-scores 56
Document # 1000000041922 v01
For Research Use Only. Not for use in diagnostic procedures.
66
NextSeq 550Dx Research Mode Instrument Reference Guide

illumina NextSeq 550Dx Specifications

General

Brand	illumina
Model	NextSeq 550Dx
Category	Laboratory Equipment
Language	English