Figures
xiv TSQ Altis, Quantis, and Fortis Hardware Manual Thermo Scientific
Figure 38. Illustration of the precursor scan type . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 75
Figure 39. Illustration of the neutral loss scan type . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 76
Figure 40. Examples of compounds with a common fragment . . . . . . . . . . . . . . . . . . . . . . 77
Figure 41. Examples of Profile (left) and Centroid (right) Data . . . . . . . . . . . . . . . . . . . . . 79
Figure 42. Data Acquisition pane in the Tune window . . . . . . . . . . . . . . . . . . . . . . . . . . . . 83
Figure 43. Run Sequence dialog box (partial) showing the selected start instrument . . . . . 84
Figure 44. Change Instrument in Use dialog box. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 85
Figure 45. Templates in Method Editor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 86
Figure 46. API source interface removed from the vacuum manifold. . . . . . . . . . . . . . . . . 96
Figure 47. Removing the multipole MP00 and lens L0 assembly (TSQ Altis MS). . . . . . . 97
Figure 48. Removing the RF lens and exit lens (TSQ Quantis MS). . . . . . . . . . . . . . . . . . 98
Figure 49. Removing the lens L0 and multipole MP00 from the MP00-L0 mount cage . . 98
Figure 50. Removing the multipole MP00 and lens L0 assembly (TSQ Fortis) . . . . . . . . . 99
Figure 51. Removing the exit lens (TSQ Fortis) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 100
Figure 52. Removing the lens L0 and multipole MP00 from the MP00-L0 mount cage . 100
Figure 53. Ion sweep cone removed from the MS mount assembly . . . . . . . . . . . . . . . . . 104
Figure 54. Ion transfer tube removal tool (TSQ Altis MS) . . . . . . . . . . . . . . . . . . . . . . . . 105
Figure 55. Ion transfer tube removal tool (TSQ Quantis MS) . . . . . . . . . . . . . . . . . . . . . 106
Figure 56. Ion transfer tube removal tool (TSQ Fortis MS) . . . . . . . . . . . . . . . . . . . . . . . 106
Figure 57. Spray cone, O-ring, ion transfer tube, and ion sweep cone (TSQ Quantis and
TSQ Fortis) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 107
Figure 58. Air filter location in the MS with the front cover removed . . . . . . . . . . . . . . . 112
Figure 59. Tune window showing the Define Scan pane . . . . . . . . . . . . . . . . . . . . . . . . . 114
Figure 60. Tune Preferences dialog box . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 118
Figure 61. Q3 Resolution selected and added to the SRM Table . . . . . . . . . . . . . . . . . . . 120
Figure 62. Favorites pane. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 122
Figure 63. State name box . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 122
Figure 64. PEEK tubing connection to syringe union . . . . . . . . . . . . . . . . . . . . . . . . . . . . 125
Figure 65. Syringe pump with syringe . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 127
Figure 66. Divert/inject valve positions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 130
Figure 67. Divert/Inject valve plumbed as a divert valve . . . . . . . . . . . . . . . . . . . . . . . . . . 131
Figure 68. Divert/inject valve (front view) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 132
Figure 69. H-ESI direct infusion . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 134
Figure 70. Low-flow H-ESI direct infusion set up . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 136
Figure 71. HPLC infusion Tee valve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 138
Figure 72. Injector valve set up . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 139
Figure 73. Divert/Inject valve plumbed as a divert valve . . . . . . . . . . . . . . . . . . . . . . . . . 140
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