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Nikon A1 User Manual

Nikon A1
88 pages
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1
Confocal Microscope
A1 Simple Instruction Manual
(Ver.4.10)
Nikon Corporation
This document is subject to change for improvement without prior notice.
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Nikon A1 Specifications

General IconGeneral
TypeConfocal Microscope
SoftwareNIS-Elements
Laser Lines405 nm, 488 nm, 561 nm, 640 nm
DetectorGaAsP PMT detectors
Imaging ModesConfocal, Spectral, FRAP
Scanning MethodGalvanometer-based scanning
ObjectivesCompatible with Nikon CFI objectives
DimensionsVaries with configuration
WeightVaries with configuration
LaserMultiple laser lines available

Summary

Nikon Confocal Microscope A1 Simple Instruction Manual

1 Introduction

2 Startup

2.1 Turn on the power to the microscope.

Steps for powering on the motorized stage, piezo Z stage, halogen lamp, mercury lamp, and microscope.

2.2 Turn on the power to the laser.

Procedure for turning on the laser.

2.3 Turn on the power to the controller.

How to power on the microscope controller.

2.4 Start the PC.

Steps to initiate the computer system.

2.5 Run the NIS-Elements software.

Instructions for launching the NIS-Elements software.

3 Operation of the Microscope

3.1 Ti Remote Control Pad (Ti-RCP) Operation

Operating the Ti Remote Control Pad for microscope adjustments.

3.2 Microscopy Setting

Setting microscopy components like optical path, filters, and condensers.

3.3 Operation Panel on the Microscope Ti-E Main Body

Description of controls on the Ti-E microscope main body.

3.4 HG Controller Operation (Shutter Controller for Visual Fluorescence Microscopy)

Operating the HG Controller for fluorescence microscopy.

3.5 Joystick Controller Operation (Controller for Driving the Motorized Stage)

How to operate the joystick for stage movement and focus.

3.6 Perfect Focus System Operation (with the Front Operation Panel)

Operating the Perfect Focus System using the front panel.

3.7 Remote Controller for A1

Detailed operation of the A1 remote controller.

4 Capturing Color Images (Standard Detector)

4.1 Run the NIS-Elements software.

Steps to launch the NIS-Elements software for image capture.

Observe the sample through the microscope.

Procedures for sample observation and microscope setup.

4.3 Switch the optical path to A1.

Switching the optical path to the A1 system.

4.5 Select a scan mode.

Selecting the desired scan mode (e.g., Galvano).

4.7 Determine image acquisition conditions and acquire images.

Setting up acquisition parameters and capturing images.

4.8 Save an image.

Instructions for saving acquired images.

5 Capturing Multistained Images: Cross Talk Reduction (Standard Detector)

5.2 Set a channel series.

Setting up channel series for multistained imaging.

5.3 Determine image acquisition conditions and acquire images.

Setting acquisition parameters and capturing multistained images.

5.4 Save an image.

Saving multistained images.

6 Capturing Confocal Zoom

6.2 Call the Scan Area window.

Accessing the Scan Area window.

6.3 Select the zoom area.

Defining the area for zoom magnification.

6.4 Rotate the scan area as needed.

Rotating the scan area for specific imaging.

6.5 Click the [Live] button to readjust image acquisition conditions.

Re-adjusting acquisition parameters using the Live function.

7 Capturing ROI Scan and CROP Scan

7.2 Call the Scan Area window.

Accessing the Scan Area window.

7.3 Select the area to be scanned.

Defining the Region of Interest (ROI) for scanning.

7.4 Readjust image acquisition conditions while checking the live image.

Adjusting acquisition settings with live image feedback.

8 Capturing Z Series Images

8.2 Determine the range for capturing Z series images.

Setting the Z-axis range for image acquisition.

8.3 Acquire Z series images.

Acquiring images across multiple Z-planes.

9 Capturing Z Series Images (While Changing Brightness)

9.2 Call the Z Intensity Correction dialog box.

Opening the dialog for Z-intensity correction.

9.3 Specify the Z position and set brightness at that position.

Setting Z position and adjusting brightness.

9.4 Register laser power, HV, or others at each Z position.

Registering parameters for each Z position.

10 Creating Three-Dimensional Image

10.1 Create a three-dimensional image.

Generating a 3D image from Z-series data.

10.3 Create a rotation image of the three-dimensional image.

Creating a rotating movie of a 3D image.

11 Creating a Slice View Image and a Projection Image

11.1 Create a slice view image or a projection image.

Generating slice or projection views from Z-series.

12 Capturing Time Series Images

12.2 Set the time series time settings.

Configuring settings for time-lapse imaging.

12.3 Acquire time series images.

Performing time-lapse image acquisition.

13 Time Measurement

13.2 Display [Time Measurement].

Accessing and displaying the time measurement tool.

13.3 Set a ROI (Region of Interest) on the image.

Defining Regions of Interest for measurement.

13.4 Perform time measurement.

Executing time-based measurements and generating graphs.

13.5 How to Use Time Measurement

Guidance on utilizing the time measurement features.

14 Capturing Photo Activation Imaging (Galvano Scanner / Time-Series Activation)

14.3 Set the laser light for activation.

Configuring laser settings for photo activation.

14.4 Set time series for photo activation simultaneous imaging.

Setting time-lapse parameters for simultaneous photo activation.

15 Image Display Function

15.1 Channel display switch

Switching between different image channels for display.

15.2 Multidimensional image display switch

Navigating and displaying multidimensional image data.

15.3 Inserting a scale

Adding a scale bar to images.

15.4 Inserting acquisition information into time-lapse image

Displaying acquisition metadata on images.

15.5 Saving images

Methods for saving images, including special cases.

15.6 Reading image acquisition conditions

Retrieving acquisition parameters from saved images.

15.7 Reading the control state of the microscope

Accessing microscope control status from acquired images.

15.8 Adjusting Contrast

Adjusting image contrast and brightness using LUTs.

16 Extracting ND2 Files

18 Shutdown

18.1 Exit the NIS-Elements software.

Procedure for closing the NIS-Elements software.

18.2 Turn off the power to the laser.

Steps to safely power down the laser unit.

18.3 Turn off the power to the controller.

Steps to safely power down the microscope controller.

18.4 Turn off the power to the microscope.

Sequence for powering down the microscope main body.

18.5 Shut down the PC.

Steps to properly shut down the computer.

19 Capturing Spectral Images (Spectral Detector)

19.1 Run the NIS-Elements software.

Launching the NIS-Elements software for spectral imaging.

Observe the sample through the microscope.

Sample observation and microscope setup procedures.

19.3 Switch the optical path to A1.

Switching the optical path to the A1 system for spectral imaging.

19.6 Determine image acquisition conditions.

Setting acquisition parameters for spectral images.

19.7 Save an image.

Saving spectral images.

20 Separating Spectral Image (Unmixing)

20.2 Spectral unmixing

Performing spectral unmixing using ROI data.

21 Live Unmixing (Spectral Unmixing for Live Image)

21.1 Set the reference data to be used for spectral unmixing.

Preparing reference spectral data for live unmixing.

21.2 Perform spectral unmixing for live image.

Executing live spectral unmixing on the sample.

22 Capturing Virtual Filter Images (Spectral Detector)

22.1 Run the NIS-Elements software.

Launching NIS-Elements software for virtual filter imaging.

Observe the sample through the microscope.

Sample observation and microscope setup procedures.

22.3 Switch the optical path to A1.

Switching the optical path to the A1 system.

22.6 Determine image acquisition conditions.

Setting acquisition parameters for virtual filter images.

22.7 Save an image.

Saving virtual filter images.

23 Capturing Multipoint Time Series Images

23.2 Set image acquisition points.

Defining multiple image acquisition points.

23.3 Acquire a multipoint time series image.

Acquiring time-lapse images at multiple points.

24 Capturing Large Images

24.2 To set Z series, set Z stack beforehand.

Pre-configuring Z-stack settings for large images.

24.3 Determine the large image acquisition area.

Defining the area for capturing large images.

24.4 Perform the advanced settings of large images.

Configuring advanced settings for large image acquisition.

24.5 Specify the way of focusing

Setting the method for focusing during large image capture.

24.6 Perform the save settings and acquire images.

Configuring save options and acquiring large images.

25 Capturing High-Speed Images (Resonant Scanner)

25.2 Select a scan mode.

Selecting the resonant scan mode.

25.3 Determine image acquisition conditions.

Setting acquisition parameters for high-speed imaging.

25.4 Save an image.

Saving high-speed images.

26 Capturing High-Speed ZT Series Images (Resonant Scanner)

26.2 Open the ND Acquisition dialog box.

Opening the ND Acquisition dialog box.

26.3 Determine the Z acquisition range of the ZT series.

Setting the Z-axis acquisition range for ZT series.

26.4 Set the ZT series time settings.

Configuring time-lapse settings for ZT series.

27 Capturing Simultaneous Photo Activation Imaging (Resonant & Galvano Scanner)

27.3 Set the laser light for activation.

Configuring laser settings for photo activation.

27.4 Set time series for photo activation simultaneous imaging.

Setting time-lapse for simultaneous photo activation imaging.

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