CIRAS-3 Operation Manual V. 1.09  140  support@ppsystems.com 
 
Section 11.  Closed System Measurements 
Soil CO
2
 Efflux and Net Canopy CO
2
 Flux  
The SRC-1 and SRC-2 Soil Respiration Chambers can be used with the CIRAS-3 Portable CO
2
/H
2
O 
Gas Analysis System for closed system measurement of soil CO
2
 efflux.  The CPY-4 and CPY-5 Canopy 
Assimilation Chamber can also be used with the CIRAS-3 for closed system measurement of net 
canopy CO
2
 flux.  Important Note.  When using the SRC-1, SRC-2, CPY-4 and CPY-5 with the 
CIRAS-3, the reference sampling pump must be sealed to ensure leak-tight seal for closed system 
operation.  Please contact PP Systems if you have any questions. 
Theory 
The respiration/assimilation is measured by placing a closed chamber on the soil and measuring the rate 
of increase of the CO
2.
concentration inside the chamber.  Then, assuming a well-mixed and sealed 
system : 
              (1) 
Where R is the respiration/assimilation rate (CO
2
 flux, or moles of CO
2
 unit area
-1
 unit time
-1
), Co is the 
CO
2 
concentration at T=0 and Cn is the concentration at a time Tn later. A is the area of soil exposed and 
V the total system volume. 
It has been suggested that to make accurate measurements of the assimilation it is essential to start with 
a CO
2
 concentration in the cuvette below (respiration)/above(photosynthesis) ambient and measure until 
the concentration is above/below ambient, presumably with the intention of getting some compensation 
for leakage.  However, this leakage can only take place at ground level, where the CO
2
 concentration is 
unknown and most certainly will not be what we would consider as ambient. 
Over the short period of measurement and with the relatively small CO
2
 concentrations in the chamber 
compared with the soil concentrations, we would expect the assimilation to be a constant flux, giving a 
constant rate of change in the cuvette CO
2
 concentration. 
Any leakage should be a function of the concentration difference between the cuvette and the exchange 
air.  Due to leakage, the apparent assimilation rate decreases with time.