Liberty
™
Automated Microwave Peptide Synthesizer
600178 • Revision 5 • October 2009
20
Introduction to PepDriver
The operation of the Liberty is controlled through the PepDriver software package. The Liberty
includes an external computer controller (either a laptop or desktop Windows PC) for running
PepDriver. This computer is connected to the Liberty and the Discover through an ethernet
connection.
PepDriver Terminology
Throughout this manual, specic terms will be used to describe the various functions within
PepDriver.
• Microwave Method: The specic parameters used in a Microwave step
within a cycle. Microwave Methods can be created or modied using the
Microwave Editor (p. 25).
• Cycle: The specic steps used for each residue within a given sequence.
Cycles can be created or modied using the Cycle Editor (p. 28).
• Sequence: The specic peptide to be synthesized in a given method.
Sequences can be created or modied using the Sequence Editor (p. 32).
• Method: The specic parameters used to synthesize a peptide. For each
method, a sequence is selected, and then parameters (individual coupling
cycles for each residue, C-terminus type, nal deprotection, etc.) are also
selected as part of the method. Methods can be created or modied using
the Method Editor (p. 36).
• Run: A specic instance of a method being loaded and started in PepDriver.
A Run History le (p. 56) is recorded for each run.