5 Automatic Runs
144 July 29, 2013, 715003794 Rev. B
• When the separations module is running under Empower software
control, and you press Abort in the Run Samples window, the separation
module continues running the current gradient and event functions.
• You can operate the separations module from its front panel whenever it
is not being run by the Empower software.
Perform automatic runs under MassLynx control
If the separations module is configured for MassLynx software control (v3.5),
you perform an automatic run via the MassLynx software. When the
separations module is running under MassLynx software control, the term
“Remote” appears in the banner area. Configure the separations module for
MassLynx software control as described in “Configure the operating mode” on
page 98.
Perform an automatic run using MassLynx software
Tip: You can operate the separations module from its front panel whenever it
is not being run by the MassLynx software.
To perform an automatic run at the MassLynx workstation:
Tip: See the MassLynx online help for an explanation of how to perform the
tasks in these steps.
1. Configure an LC/MS system that includes the separations module.
2. From the Inlet Editor, create an LC method for the separations module
and the detector (but not for the mass spectrometer).
3. Acquire a single sample from the Inlet Editor.
Tip: To acquire multiple samples, create a sample processing list from
the MassLynx Top Level window.
4. Process and print the data acquired from the chromatographic run.
Caution: Do not edit the default method in the separations module when
the separations module is running under Empower software control.
Doing so can cause unexpected behavior.
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