1100 Series Nano Pump Service Manual 99
Troubleshooting and Test Functions 2
Failure to produce peaks, or abnormally small peaks, after injection
There are no peaks, or the peak size is significantly below the typical peak size 
for this method with this column.
Table 11 Failure to produce peaks, or abnormally small peaks, after injection: Possible Causes and Suggested 
Actions
Possible Causes  Suggested Actions  Notes
A leak in a sample carrying 
area of the system.
• Using a flashlight and absorbent tissue, 
carefully check for leaks in the following areas:
a. All micro-sampler valve ports.
b. The junction of the needle and sample loop 
capillary.
c. The needle/seat interface.
d. Column inlet and outlet.
e. Flow cell inlet capillary, at the capillary/cell 
body junction.
At very low flow rates, a leak may 
never accumulate enough liquid to 
trigger the module leak sensors. Low 
flow rate leaks are also very hard to 
see.
The 40 µl chamber of the 
micro-sampler metering head 
has developed bubbles.
• In the user interface diagnostics, access the 
Change Piston function of the micro-sampler 
maintenance positions. This function draws the 
metering piston fully inward, clearing the 
chamber. 
• Under flow conditions, activate this function for 
at least 5 minutes. The sampler valve must be in 
the mainpass position at this time. Any bubbles 
which have formed in the chamber will now be 
cleared by the flow.
In most applications, only a small 
part of the available 40µl metering 
head volume is used. At very low 
flows, bubbles may form in the 
unused space between the metering 
piston and the chamber wall. The 
bubbles act to defeat the draw of 
sample into the needle.
For best results in clearing bubbles, 
the mobile phase being pumped 
should not contain water.