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BD FACSCalibur - User Manual

BD FACSCalibur
238 pages
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IVD
For In Vitro Diagnostic Use
bdbiosciences.com
Part No. 643271 Rev. A
November 2007
BD Biosciences
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BD FACSCalibur
Instructions For Use

Table of Contents

Question and Answer IconNeed help?

Do you have a question about the BD FACSCalibur and is the answer not in the manual?

Summary

About These Instructions

Conventions

Explains conventions used in the instructions, including hazard symbols and text formatting.

Introduction

System Components and Theory of Operation

Overview of the BD FACSCalibur system, including the flow cytometer and workstation.

Cytometer Components

Details of the BD FACSCalibur sensor unit and its components.

Fluidics Components and Theory of Operation

Explanation of how samples are carried to the flow cell and the role of the fluidics system.

Optics Components and Theory of Operation

Explanation of the BD FACSCalibur optics system, including lasers and detectors.

Optics System with FL4 Option

Diagram and explanation of the optics system when the FL4 option is installed.

Loader (Optional)

Description of the BD FACS Loader option for automated acquisition from tubes.

Carousel

Details about the carousel rack's capacity and features for holding sample tubes.

Keypad

Explanation of the keypad used to operate the BD FACS Loader manually.

Power Controls

Information on how to operate the main power switches for the cytometer and transformer.

System Requirements

Hardware and software requirements for operating the BD FACSCalibur system.

BD FACStation Software

BDPAC Software

Software for installing required startup files or BD Inits for acquisition.

BD CellQuest Pro Software

Software for general data acquisition and analysis.

BD FACSComp Software

Software for instrument calibration and quality control.

BD FACSComp Preferences

Configuration options for BD FACSComp software, including optimization and export.

BD FACSComp Files

Description of calibration files, target files, and summary reports generated by FACSComp.

BD Multiset Software

Software for identifying lymphocytes and subsets in stained samples.

BD Multiset Tools

Tools within BD Multiset for defining ranges, creating panels, and managing comments.

BD Multiset Files

Types of files created by BD Multiset software, including schedule, reports, and data files.

BD HLA-B27 Software

Software for determining HLA-B27 antigen expression.

BD HLA-B27 Preferences

Configuration options for BD HLA-B27 software, including export, printing, and scaling.

BD HLA-B27 Files

Types of files created by BD HLA-B27 software, including schedule, reports, and data files.

BD FACS Loader Software

Description of the BD FACS Loader software and its integration.

Worklist Manager Preferences

Settings for Worklist Manager, including loader communication and custom columns.

Worklist Manager Files

File types created by Worklist Manager, such as worklist documents and summary reports.

Starting Up

Filling the Sheath Reservoir

Procedure for filling the sheath reservoir to 75% capacity.

Priming the Fluidics

Procedure to remove bubbles from the flow cell using the PRIME function.

Emptying the Waste Reservoir

Procedure for emptying the waste reservoir to prevent overflow.

Instrument QC

Setting Up for QC

Steps for launching BD FACSComp software and selecting assays for quality control.

Running BD FACSComp Software

Instructions for running BD FACSComp software for instrument QC.

Acquiring Manually

Procedure for manually acquiring data for instrument QC.

Optimizing Settings

Adjusting instrument settings to optimize performance and ensure accurate results.

Logging QC Results

Methods for maintaining a log of instrument quality control results.

Running Samples Manually

Setting Up an Experiment Document

Steps to create or adapt a Standard Acquisition Experiment document for sample analysis.

Adjusting FSC, SSC, and FSC Threshold

Procedure to adjust scatter detectors and threshold for optimal sample display.

Gating the Population of Interest

Creating polygon regions to define and isolate cell populations in scatter plots.

Adjusting Fluorescence Detector Settings

Adjusting detector voltages to remove background fluorescence and optimize settings.

Adjusting Compensation Settings

Adjusting settings to correct for spectral overlap between fluorophores.

Saving Optimized Settings

Saving instrument settings to a file for later restoration.

Acquiring Data

Steps for acquiring sample data, including specifying file name and location.

Specifying Acquisition and Storage Settings

Defining the number of events to acquire and store, and specifying data storage.

Specifying Parameter Labels (Optional)

Associating reagent names with fluorescence parameters for clearer data analysis.

Defining Panels (Optional)

Creating panels to group reagent combinations for multiple experiments or donors.

Working With Panels in the Browser

Associating plots with tubes in the Browser using defined panels.

Specifying Tube-Specific Settings (Optional)

Associating custom instrument or acquisition settings with specific tubes in a panel.

Saving Data

Procedures for saving acquired data for each tube.

Analyzing Data

Steps for analyzing acquired FCS data files using BD CellQuest Pro software.

Creating an Analysis Dot Plot

Steps to create a dot plot and display data from a selected file.

Creating an Analysis FL1 vs FL2 Contour Plot

Generating a contour plot showing gated data from a selected file.

Displaying Statistics

Selecting and editing quadrant statistics to display in analysis reports.

Analyzing Groups of Files

Using batch analysis to analyze multiple data files and export statistics.

Running Samples with the Loader

Preparing an Acquisition Document

Creating application-specific documents with defined acquisition conditions for Worklist Manager.

Setting Up BD Worklist Manager Software

Launching and signing into BD Worklist Manager software.

Setting Up Assay Settings

Associating instrument settings with panels and customizing mix settings.

Running BD FACSComp Software

Instructions for running BD FACSComp software with the Loader.

Saving the Worklist

Saving worklist information to use as a template for daily worklists.

Entering Sample Information

Entering sample details manually, via barcode, or by importing a worklist.

Assigning Racks

Assigning tube positions to samples and defining rack locations.

Running Samples

Loading racks onto the Loader and initiating sample acquisition.

Pausing Acquisition

Procedures for pausing or stopping the Loader during acquisition.

Rerunning a Sample

Performing full-panel reruns of finished or stopped worklists.

Shutting Down

Daily Shutdown with the Loader

Procedures for daily shutdown, including optional cleaning after automatic clean.

Maintenance

Scheduled Maintenance

Routine maintenance procedures performed on a regular schedule.

Decontaminating the Fluidics

Procedure for cleaning the system fluidics monthly or more frequently.

Changing the Sheath Filter

Instructions for replacing the sheath filter to trap debris.

Unscheduled Maintenance

Maintenance tasks performed as needed, not on a fixed schedule.

Changing the Bal Seal

Procedure for replacing the Bal seal to ensure proper tube pressurization.

Changing the Sample O-ring

Procedure for replacing the sample O-ring for droplet containment vacuum.

Loader Maintenance

Procedures for maintaining the BD FACS Loader.

Troubleshooting

Instrument Troubleshooting

Common issues and solutions related to the instrument's hardware and basic functions.

Acquisition Troubleshooting

Solutions for problems encountered during sample acquisition.

BD FACSComp Troubleshooting

Troubleshooting common issues with the BD FACSComp software.

BD Multiset Troubleshooting

Troubleshooting common error codes and issues with BD Multiset software.

Loader Troubleshooting

Solutions for problems encountered with the BD FACS Loader.

Appendix A: Supplies and Replacement Parts

Instrument Supplies

List of general instrument supplies and their reorder numbers.

Accessory Kit

List of items included with the instrument, with reorder numbers.

Other Replacement Parts

List of replacement parts for the instrument, with part numbers.

Consumables

List of consumable items used with the instrument, such as tubes and pads.

Instrument Setup

Catalog numbers and purposes for BD Calibrite beads and kits.

Reagents

List of reagents used with the instrument, including catalog numbers.

Labware

Catalog numbers for labware items like test tubes and absorbent pads.

Appendix B: Technical Specifications

Cytometer Specifications

Physical dimensions, weight, power requirements, and consumption of the cytometer.

Environment

Operating temperature, humidity, noise level, and facility requirements.

Performance

Fluorescence and scatter sensitivity, resolution, and carryover specifications.

Optics

Specifications for lasers, excitation optics, and emission optics.

Fluidics

Details on general operation, fluid reservoirs, pressure, and flow rates.

Signal Processing

Workstation resolution, data acquisition channels, and fluorescence compensation.

Loader Specifications

Compatibility and specifications for the BD FACS Loader, including racks and tubes.

Connections

Schematics showing connections between the cytometer, computer, and Loader.

Appendix C: Performance Data

Accuracy

Regression analysis comparing BD Multitest CD3/CD8/CD45/CD4 results.

Precision

Within-specimen reproducibility studies for subset percentages and absolute counts.

Linearity

Evaluation of linear range for WBC and lymphocyte concentrations.

BD FACSCalibur Specifications

General IconGeneral
TypeFlow Cytometer
DetectorsPhotomultiplier tubes (PMTs)
Data Acquisition RateUp to 10, 000 events per second
SoftwareBD CellQuest Pro
Laser Configuration488 nm blue laser, 635 nm red diode laser
Fluorescence Channels4
Sample InputTest tubes or microcentrifuge tubes
Sample Flow RateAdjustable
Data AcquisitionBD CellQuestâ„¢ software
Analysis SoftwareBD CellQuest Pro
Sample Tube Capacity12 x 75 mm tubes
Dimensions76 cm x 61 cm

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