Thermo Scientific Applied Biosystems SeqStudio Genetic Analyzer - View the Install Run History

Thermo Scientific Applied Biosystems SeqStudio Genetic Analyzer

242 pages

Save Page as PDF

To Next Page

To Next Page

To Previous Page

To Previous Page

Loading...

Example sequencing run report

In the home screen:

1.

Touch Seings4Maintenance and Service4Install run history.

View the install

run history

Appendix C Dye calibration and install standard checks

Perform an install run

C

210

SeqStudio

™

Genetic Analyzer Instrument and Software User Guide

Table of Contents

Default Chapter3
- Table of Contents3
CHAPTER 1 Product Information12
- Instrument Overview13
- Parts of the Instrument14
  - Instrument Status Indicator15
- Seqstudio ™ Genetic Analyzer Consumables15
- Software Features22
- Seqstudio ™ Plate Manager Overview24
  - Computer and Operating System Options25
  - Recommended Browsers25
- Seqstudio ™ Remote Monitoring App Overview26
- Network Connection Options27
- Network and Password Security Requirements27
  - Network Configuration and Security27
  - Password Security27
- Experiment Types28
- Data Output29
- Secondary Analysis Software29
- Workflow: Connect Cloud-Based Platform or Desktop31
- Workflow: Instrument32
- Precautions for Use33
CHAPTER 2 Prepare the Samples and the Instrument34
- Power on the Instrument34
- Sign in34
- Sign in with the Guest Instrument Profile35
- Sign out35
- Parts of the Home Screen36
- Prepare the Samples37
- Prepare the Instrument39
  - Check the Consumables Status39
  - Load the CBC, the Sample Plate, and the Cartridge41
CHAPTER 3 Use the Instrument with the Connect Cloud-43
- Based Platform43
- Understanding Instrument and Connect Cloud-Based Platform Interaction43
- Connect Cloud-Based Platform Administrators for an Instrument48
- Register and Obtain a Connect Cloud-Based Platform Account50
- Link the Instrument to Your Connect Cloud-Based Platform Account51
- Change Your Own Connect Cloud-Based Platform Instrument Profile PIN52
- Set up Email Notifications from the Instrument53
- And E-Signature (SAE) V2.0 Module55
CHAPTER 4 Use the Instrument with the Security, Auditing56
- Overview of the Security, Auditing, and E-Signature (SAE) V2.0 Module Components56
  - Overview of the Security, Auditing, and E-Signature (SAE) V2.056
  - Module Components56
- Configuring the SAE Module57
- Instrument Functionality When SAE Is Enabled or Disabled58
- Connect the Instrument to an SAE Server (Administrator Only)58
- Enable SAE on the Instrument and Specify the SAE Server (Administrator Only)59
- Disable SAE (Administrator Only)59
  - Enable SAE on the Instrument and Specify the SAE Server59
  - (Administrator Only)59
- Sign in with SAE Enabled60
- Specify Audit Reasons61
- E-Signature Requirements When You Start a Run61
- Sign a Plate Setup63
- View E-Signature Records for a Plate Setup63
- Sign a Dye Calibration or an Install Run64
- View E-Signature Records for a Dye Calibration or an Install Run64
- Signing in after Automatic Screen Locking64
- Use the Instrument When the SAE Server Is Offline65
- Auditing of Imported Plate Setups65
- SAE Error Messages and Actions66
CHAPTER 5 Create or Modify a Plate Setup from the67
- Plate Manager67
- Overview of Plate Setup Settings67
- Set up a Plate Using Default Settings (Plate Manager)69
- Additional Plate Settings (Plate Manager)74
CHAPTER 6 Create or Modify a Plate Setup from the Instrument77
- PSM and CSV Plate Setup Files for Import into the Instrument78
- Shared (Public), Hidden (My Plates), and Guest Plate Setup Files79
- Overview of Plate Setup Settings79
- (Optional) Set up for Auto Export of Sample Data Files (AB1 and FSA)80
- Set up a Plate Using Default Settings (Instrument)81
- Set Optional Plate Settings (Instrument)87
- Load the Plate or the Tube Assembly92
CHAPTER 7 Start and Monitor a Run93
- Select a Plate Setup and Start a Run93
  - Automatic File Cleanup94
- Lock the Touchscreen95
- Monitor a Run from the Connect Cloud-Based Platform95
- Monitor a Run from a Mobile Device103
- Monitor a Run from the Instrument105
- Unload the Plate or the Tube Assembly109
CHAPTER 8 View and Analyze Results110
- View Results in the Remote Monitoring App on the Connect Cloud-Based Platform110
- View Results on the Instrument111
- Export Results from the Instrument (Sample Data Files and QC Reports)121
- Analyze Data121
CHAPTER 9 Manage the Software (Plate Manager)122
- Add a Custom Dye Calibration to the Plate Manager122
- Download a Plate Setup Template as a CSV File122
- Save a Plate Setup as a PDF123
- Save a Plate Setup as a CSV File123
- Create a Plate Setup Template123
- Delete Plate Setups124
- Manage Email Notifications in the Connect Cloud-Based Platform124
- Manage Run Modules125
- Manage Size Standards125
- Manage Analysis Settings126
  - Fragment/Hid Analysis Settings (Size Calling)126
  - Sequencing Settings (Base Calling)129
CHAPTER 10 Manage the Software (Instrument)130
- Connect the Instrument to a Network Drive130
- Link the Instrument to Your Connect Cloud-Based Platform Account136
- Lock the Touchscreen137
- Manage Plate Setups138
  - Export or Delete a Plate Setup (PSM File)138
  - Import a Plate Setup from a CSV or PSM File139
- Manage Run Settings (Instrument)139
- Manage Instrument Settings147
- Manage Instrument Profiles on the Instrument151
- Manage Storage Space153
CHAPTER 11 Maintain the Instrument156
- Regular Maintenance Tasks156
- Manage the Cartridge158
- Install Cathode Buffer166
- Troubleshooting Resources169
APPENDIX A Troubleshooting170
- Troubleshooting Workflow170
- Export Log Files for Plates, Install Runs, Injections, and Instrument170
- View the Raw Data and the EPT Plot171
- Data Quality Alerts171
- Sizecalling and Basecalling Quality Alerts171
- Check Size Standard Quality172
- Instrument Troubleshooting173
- Cartridge Troubleshooting174
- Sample and Data Troubleshooting175
- EPT Data180
- Software Troubleshooting181
- Service Tools183
APPENDIX B Link the Instrument to Your Connect Cloud- Based Platform Account-Detailed Instructions184
- Workflow: Set up the Instrument for Connect Cloud-Based Platform Access184
- Network Requirements184
- Link the Instrument from a Mobile Device185
  - The Instrument186
  - Register the Instrument with the Instrument Connect App186
- Link the Instrument Using a Link Code186
- Set up Email Notifications from the Instrument190
APPENDIX C Dye Calibration and Install Standard Checks192
- Calibrate Dyes192
- Perform an Install Run203
APPENDIX D Create and Run an HID Plate212
- HID Analysis Requirements212
- Pull-Up Reduction Feature213
- Resolution Algorithm214
- Workflow: HID Analysis215
- HID Install Run215
- HID Run Module, Dye Sets, Size Standard Definitions, and Kits216
- Manage Kits (HID Applications Only)217
APPENDIX E Run Modules218
- Run Modules, Read Lengths, Size Ranges, and Run Times218
APPENDIX F Parts and Materials220
- Required Materials Not Supplied220
APPENDIX G Instrument Specifications and Layout222
- Instrument Dimensions222
- Instrument Clearances222
- Environmental Requirements223
- Electrical Requirements224
- Electrical Protective Devices224
- Network Requirements225
- Safety Requirements225
  - Safety Practices225
  - Required Safety Equipment226
APPENDIX H Safety227
- Symbols on this Instrument227
  - Conformity Symbols228
- Safety Alerts on this Instrument229
- Safety Information for Instruments Not Manufactured by Thermo Fisher Scientific230
- Instrument Safety230
- Safety and Electromagnetic Compatibility (EMC) Standards232
- Chemical Safety234
- Biological Hazard Safety235
- Documentation and Support236
- Related Documentation236
- Customer and Technical Support236
- Limited Product Warranty237
- Index238

Other manuals for Thermo Scientific Applied Biosystems SeqStudio Genetic Analyzer

Getting Started Guide64 pages

Related product manuals

Thermo Scientific Star A121

Preview: Thermo Scientific Antaris II

Thermo Scientific Antaris II

Preview: Orion Star A215

Orion Star A215

Orion Star A212

Preview: Orion Star A221

Orion Star A221

Preview: Orion Star A211

Orion Star A211

Preview: Orion Star A112

Orion Star A112

Preview: Orion Star A214

Orion Star A214

Preview: Orion Star A210 Series

Orion Star A210 Series

Preview: Orion Star A220 Series

Orion Star A220 Series

Orion AquaMate 7000 Vis

Preview: Orion Star A212 Benchtop

Orion Star A212 Benchtop