Thermo Scientific Applied Biosystems SeqStudio Genetic Analyzer User Manual

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CHAPTER 7 Start and monitor a run .................................. 92
Load the plate or the tube assembly .............................................. 92
Select a plate setup and start a run ............................................... 93
Automatic file cleanup ...................................................... 94
Lock the touchscreen ........................................................... 95
Monitor a run from the Connect cloud-based platform .............................. 95
Open the Remote Monitoring App from Instrument Connect App ................ 95
Open the Remote Monitoring App from the Plate Manager ...................... 97
View notifications from the instrument on your Connect cloud-based
platform account .......................................................... 99
View results in the Remote Monitoring App on the Connect cloud-based platform .. 99
Monitor a run from a mobile device .............................................. 103
Monitor a run from the instrument .............................................. 105
(Optional) View the injection list, change injection settings or order, or
specify replicates and re-injections ......................................... 105
View the run status ....................................................... 105
View real-time results ..................................................... 106
Pause a plate or cancel or stop injections .................................... 106
View results when the run is completed ..................................... 107
Unload the plate or the tube assembly ........................................... 109
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CHAPTER 8 View and analyze results ............................... 110
View results in the Remote Monitoring App on the Connect cloud-based platform ..... 110
View results on the instrument ................................................. 111
View results when the run is completed ..................................... 111
Fragment/HID analysis results ............................................. 113
Sequence analysis results ................................................. 115
EPT plot ................................................................. 117
View results for a previously run plate (run history) ........................... 118
Data quality alerts ........................................................ 119
Sizecalling and basecalling quality alerts ................................... 119
Edit injection parameters and re-inject samples .............................. 120
Export a report (QC report) ................................................. 120
Export results from the instrument (sample data files and QC reports) ............... 121
Analyze data .................................................................. 121
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CHAPTER 9 Manage the software (Plate Manager) ................ 122
Add a custom dye calibration to the Plate Manager ............................... 122
Download a plate setup template as a CSV file .................................... 122
Save a plate setup as a PDF .................................................... 123
Save a plate setup as a CSV file ................................................. 123
Create a plate setup template .................................................. 123
Contents
6
SeqStudio
™
Genetic Analyzer Instrument and Software User Guide

Thermo Scientific Applied Biosystems SeqStudio Genetic Analyzer Specifications

General

Brand	Thermo Scientific
Model	Applied Biosystems SeqStudio Genetic Analyzer
Category	Measuring Instruments
Language	English