Table of Contents 7
B Materials of construction and compliant solvents ....................... B-1
Preventing contamination ............................................................................. B-1
Items exposed to solvent ................................................................................ B-1
Solvents used to prepare mobile phases .................................................... B-3
C Starting up and shutting down the instrument ............................ C-1
Starting up the instrument ............................................................................ C-1
Shutting down the instrument ..................................................................... C-6
D The MassLynx Tune window ............................................................. D-1
Opening the MassLynx Tune window ......................................................... D-1
The Tune window File menu ......................................................................... D-2
The Tune window Edit menu ........................................................................ D-3
The Tune window Ion Mode menu ............................................................... D-3
The Tune window Vacuum menu ................................................................. D-4
Monitoring the instrument vacuum................................................................ D-4
Controlling and monitoring the vacuum pumps ............................................ D-5
Controlling flight tube baking......................................................................... D-9
The Tune window Inlet menu ..................................................................... D-11
The Tune window Options menu ............................................................... D-11
Controlling the display of readback windows .............................................. D-12
Viewing the status of the current scan......................................................... D-12
Setting up the instrument............................................................................. D-13
The Instrument Setup dialog box’s Magnet tab ...................................... D-13
The Magnet Constant Utility dialog box ................................................. D-14
The Instrument Setup dialog box’s Limits tab ........................................ D-16
The Instrument Setup dialog box’s Y Focus tab ...................................... D-17
The Instrument Set up dialog box Slits tab ............................................. D-19
To perform an experiment calibration.......................................................... D-20
The Select Peaks Of Interest dialog box .................................................. D-23
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