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Applied Biosystems 3500 User Manual

Applied Biosystems 3500
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Prepare the instrument
1.
In the Dashboard, check consumables status (see “Check consumables status“ on
page 33). Ensure that:
Consumables are not expired
Adequate injections remain for consumables
2.
Ensure that buer levels are at the ll lines (see “Check buer ll levels“ on
page 34).
3.
Set the oven temperature, then click Start Pre-heat.
Pre-heat the oven and detection cell while you prepare for a run (detection cell
temperature is set by the software). Pre-heating helps mitigate subtle rst-run
migration rate eects. The pre-heat function automatically turns o after 2 hours.
We recommend that you pre-heat the oven for at least 30 minutes before you
start a run if the instrument is cold.
Temperatures are displayed in red as they warm to the set-points. When
temperatures are at the set-point they are displayed in green. Temperatures may
uctuate slightly when they reach the set-point as they stabilize.
4.
Check the pump assembly for bubbles and run the Remove Bubble wizard if
needed (see “Remove bubbles from the polymer pump“ on page 237).
Prepare the fragment/HID install check standard
Prepare the standard as described in the product insert. See Appendix D, “Catalog
numbers“ for catalog numbers.
Fragment analysis: DS-33 GeneScan
Installation Standards with GeneScan
600
LIZ
Size Standard v2.0
HID: AmpFℓSTR
Identiler
Allelic Ladder (For HID install check)
Prepare the standard plate
IMPORTANT! Do not use w
arped or damaged plates.
1.
Load the standards in any injection position in the plate. The example below
shows injection position 1, but y
ou can specify the starting well for an injection
position.
IMPORTANT! You do not create a plate in the software for the install check.
8-capillary
96-w
ell plate
A1 through H1
Chapter 6 Run calibrations and install checks
Run a fragment/HID install check
6
3500/3500xL Genetic Analyzer User Guide—Data Collection Software v3.1
131

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Applied Biosystems 3500 Specifications

General IconGeneral
Number of capillaries8
Capillary Length50 cm
LaserSolid-state laser
Instrument TypeCapillary electrophoresis system
TechnologyCapillary Electrophoresis (CE)
Weight95 kg
Power Requirements100–240 V

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