Applied Biosystems 3500 User Manual

Index
.annotation.txt 37, 90
.csv
79
.fsta 37, 90
.html 90
.pdf
audit reports 208
e-sig report 216
install check report 130, 137
plate layout 50
sample quality reports 101
spatial calibration report 107, 119
spectral calibration 107, 120, 130, 137
trace quality reports 89
user report 200
.phd.1 37, 90
.qual 37, 90
.scf 37, 90
.seq 37, 90
.txt 79, 90
.xls 79, 90
.xml 79
384-well, plate assembly 56
8-tube strip
plate assembly 54
plate base 54
96-well
capillary map 51
plate assembly 53
plate base 53
A
ABC. See anode buer
abort run
72
account
setup 193
suspended, activ
ate 197
suspension 193, 220
user 195
action log, contents 207
Administrator user role 197
Advanced setup
preference 37
using 40
allelic ladder
internal validation 51
re-injection 71
requirements for accurate genotyping 51, 71
results group for one allelic ladder per run folder
52
run requirements 152
amber indicator light 17
amplicon, specifying 47
Analysis Range
fragment analysis 181
HID analysis 187
anode buer
install 229
location 15
on-instrument limits 19, 20
antivirus software 17
AnyDye, create dye set 168
archive
audit records 210
data les 244
library items 243
array. See capillary array
array selection, assign plate contents 75
array view 81
as-needed instrument maintenance 226
assays
assign to plate 77
create 144, 145
dened 44, 144
instrument protocol 146
assign plate contents
amplicon and specimen 47
array selection (capillary-to-plate map) 75
assay 77
le name convention 77
name samples 47, 73
overview 44
parts of screen 45
plate view 47, 73
results group 77
sample type 47
table view 75
template for 79
3500/3500xL Genetic Analyzer User Guide—Data Collection Software v3.1
313

Applied Biosystems 3500 Specifications

General

Number of capillaries	8
Capillary Length	50 cm
Laser	Solid-state laser
Instrument Type	Capillary electrophoresis system
Technology	Capillary Electrophoresis (CE)
Weight	95 kg
Power Requirements	100–240 V