Table of Contents 13
V4.2 LabChip GX User Manual PerkinElmer
Sample Name File Format (.CSV Format)....................................................65
Applying Different Window Values to Expected Peaks of the Same Size in
Different Wells ............................................................................................. 66
Sample Name File Import Errors.................................................................. 66
Using Expected Fragments/ Expected Proteins/ Expected Glycans................... 67
Entering EFs, EPs, or EGs in the Assay Analysis Window ........................... 67
Exporting EFs, EPs, or EGs......................................................................... 68
Importing EFs, EPs, or EGs......................................................................... 68
Forcing Expected Peaks .............................................................................. 69
Viewing the EFs/EPs/EGs in the Graph View............................................... 69
Viewing the EFs/EPs/EGs in the Gel View ................................................... 70
Viewing the EFs/EPs/EGs in the Well Table ................................................ 71
Viewing the EFs/EPs/EGs in the Peak Table ............................................... 71
Modifying Analysis Parameters ......................................................................... 72
Changing the Peak Find Parameters ........................................................... 73
Adding a Peak ............................................................................................. 74
Excluding a Peak......................................................................................... 74
Splitting a Peak............................................................................................ 75
Merging Two Peaks ..................................................................................... 75
Adjusting the Peak Baseline ........................................................................ 76
Setting the Baseline for a Range of Peaks ................................................... 76
Removing a Manual Baseline....................................................................... 77
Selecting a Default Ladder........................................................................... 77
Using the Default Ladder for Alignment........................................................ 79
Exporting the Default Ladder in an Assay .................................................... 79
Clearing the Default Ladder in a Plate ......................................................... 79
Changing the Time Window for Analysis...................................................... 80
Aligning or Unaligning the Marker Peaks ..................................................... 80
Saving and Exporting Assays ............................................................................ 84
Changing the View of the Data .......................................................................... 85
Viewing Gels ............................................................................................... 85
Viewing Zero Baselines .............................................................................. 86
Adjust Pane Widths ..................................................................................... 87
Show or Hide Views..................................................................................... 87
Zoom In and Zoom Out................................................................................ 88
Viewing Graphs in the Overlay Electropherograms Tab ............................... 89
Viewing Graphs in the Electropherograms Tab ............................................ 90
Viewing Analysis Errors and Warnings......................................................... 92
Viewing Multiple Properties in the Well Table View ...................................... 93
Copying Information .......................................................................................... 94
Reanalyzing a Data File .................................................................................... 95
Printing Workspace Information......................................................................... 96
Exporting Data ................................................................................................ 102
Exporting Data Manually............................................................................ 105
Using the GX Software to Analyze GX Touch Data........................................... 107
Understanding Peak Finding..............................................................................108