Setting Description
Sample name See “Plate file Edit Well Properties screen (sample name entry)” on page 271.
Injection protocol An injection protocol contains a run module, dye set, size standard (fragment analysis
only), and analysis settings.
An injection protocol is an optional item in a plate file. You can alternatively select the
individual items that are contained in an injection protocol.
For more information, see “Injection protocols library” on page 283.
Dye sets A dye set defines the number, dye color, and migration order of the dye peaks in the
sample.
For more information, see “Dye sets library” on page 285.
Run module A run module contains the parameters that control the instrument during data
collection.
For more information, see “Run modules library” on page 272.
Analysis settings Analysis settings define basecalling (sequencing) and sizing (fragment analysis)
parameters.
For more information, see “Analysis settings library” on page 288.
Size standards (fragment
analysis only)
A size standard defines the sizes of known fragments. It is used to generate a
standard curve. The standard curve is used to determine the sizing of unknown
samples.
For more information, see “Size standards library” on page 275.
File name conventions A file name convention specifies the naming convention for sample data files.
If you do not specify a file name convention for a plate, the following default file name
conventions are used:
•
Sequencing—Well_Sample_TimeStamp
•
Fragment analysis—Well_Sample_SampleType_TimeStamp
For more information, see “File Name Conventions library” on page 278.
Results groups A results group defines the folder name where sample data files are stored.
If you do not specify a results group, the default results group is used: StartRuntime.
For more information, see “Results Groups library” on page 301.
Chapter 11 Manage library resources on the instrument
Plate files library
11
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Flex Series Genetic Analyzer with Instrument Software v1.0 User Guide
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