Thermo Scientific appliedbiosystems SeqStudio Flex Series - Secondary Analysis Software

Secondary analysis software
Secondary analysis software is available for desktop computers and on Thermo Fisher
™
Connect.
Visit apps.thermofisher.com for the latest available secondary analysis applications.
For information on using these applications to perform automated analysis, see “Automated cloud
analysis with secondary analysis software” on page 202.
Secondary analysis applications on Thermo Fisher
™
Connect
Application type Software Description
Sequencing Quality Check (QC) module
•
Automatically checks sequence trace quality.
•
Provides a results summary that is based on quality
parameter settings.
•
Auto-flags lower-quality traces for further inspection.
Variant Analysis (VA) module
•
Finds variants in samples that are sequenced on Applied
Biosystems
™
genetic analyzers.
•
Reports variants at genomic coordinates.
•
Allows export of variant calls in standard Variant Call
Format.
Next‑generation Confirmation
(NGC) module
•
Confirms next-generation sequencing (NGS) variants
using capillary electrophoresis (CE) technology.
•
Allows visualization of the variants that are detected by
both NGS and CE platforms.
•
Allows export of confirmed variants in standard Variant
Call Format.
Fragment analysis Peak Scanner
™
Software Performs peak sizing.
Microsatellite Analysis
Software
Performs peak sizing and genotyping on microsatellite
samples.
Chapter 1 Product information
About the SeqStudio
™
Flex Series Instrument Software v1.0
1
50
SeqStudio
™
Flex Series Genetic Analyzer with Instrument Software v1.0 User Guide