Thermo Scientific appliedbiosystems SeqStudio Flex Series - QC Errors-Sequencing or Fragment Analysis Install Run

QC errors—Sequencing or fragment analysis install run
QC error
Description Action
Sequencing
Failed the CRL specification.
Low quality data, did not
meet Contiguous Read Length
requirements for an Install run.
•
Ensure that instrument
consumables are not expired
and have not exceeded
the on-instrument limits.
See “Instrument consumables
handling, usage limits, and
expiration” on page 25.
•
Ensure that the capillary array
has not exceeded the number of
injections limit.
•
Ensure the install standard
was prepared according to the
product information sheet.
•
Ensure that the install standard
was prepared in the appropriate
volume of fresh Hi‑Di
™
Formamide to ensure adequate
signal. See “Hi‑Di
™
Formamide
storage and usage” on page 28.
Fragment analysis
F
ailed allele Bin specification.
Peaks have shifted outside the
software-defined bins.
•
Ensure that polymer has been
installed on the instrument for
<3 days.
•
Ensure that instrument
consumables are not expired
and have not exceeded
the on-instrument limits.
See “Instrument consumables
handling, usage limits, and
expiration” on page 25.
Appendix A Troubleshooting
QC error and alert troubleshooting
A
494
SeqStudio
™
Flex Series Genetic Analyzer with Instrument Software v1.0 User Guide