Thermo Scientific appliedbiosystems SeqStudio Flex Series - Page 6

Run plates with the automated barcode workflow ................................. 147
Create the plate files before the barcoded plates are loaded into the drawer ..... 147
Pre-run checks and plate alerts in an automated barcode run .................. 149
View alert and notification details ............................................... 149
Auto-spectral calibration during an injection ...................................... 150
Auto-spectral calibration overview .......................................... 150
Auto-spectral calibration requirements ...................................... 151
Auto-spectral calibration results ............................................ 152
View real-time results in the home screen ........................................ 153
Pause the instrument in the home screen ........................................ 157
Use the Run queue to monitor a run on the instrument ............................ 160
Parts of the Run Queue screen ............................................. 160
View real-time results in the Run Queue screen .............................. 162
Change the injection list order .............................................. 163
Cancel or add injections or specify re-injections in the Run Queue screen ....... 165
Pause the instrument in the Run Queue screen ............................... 166
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CHAPTER 7 View results on the instrument ................................... 169
Options for viewing results on the instrument ..................................... 169
View results for a completed run (Run history) .................................... 170
Export results from the instrument—Results and data files, logs, and reports ......... 171
Sample QC and quality alerts .................................................. 172
Use the electropherogram screen ............................................... 173
Sequence analysis results ...................................................... 175
Parts of the sequencing electropherogram screen ............................ 175
Sequencing results and well details ......................................... 176
Understanding Quality Values (QVs) ......................................... 178
Fragment analysis results ...................................................... 179
Parts of the fragment analysis electropherogram screen ....................... 179
Fragment analysis results and well details ................................... 180
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CHAPTER 8 Use the Remote Monitoring software to monitor runs,
view results, and use cloud analysis ........................................... 182
Monitor a run from the Remote Monitoring software ............................... 182
Open the Remote Monitoring software from the Plate Manager software (cloud) . 182
Open the Remote Monitoring software from the InstrumentConnect software .... 183
Parts of the Remote Monitoring software home screen ........................ 184
Plate file requirements for viewing analyzed and cloud results .................. 187
View instrument notifications in your Thermo Fisher
™
Connect account .......... 188
Set up email notifications from the instrument ................................ 189
View real-time results in the Remote Monitoring software ...................... 190
Sequencing results ....................................................... 192
Fragment analysis results .................................................. 192
Contents
6
SeqStudio
™
Flex Series Genetic Analyzer with Instrument Software v1.0 User Guide